PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.YSU0C
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 368aa    MW: 43136.4 Da    PI: 10.1939
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.YSU0CgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.38.9e-21146243196
                  EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
           B3   1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                  ff vl+ps+v+ + ++l +p +f +++  g+k  +s t+   d +   W++k+++++ ++r+++ +GW++F+k+n+L++gD++vF+++ + +  ++++
  Aradu.YSU0C 146 FFLVLKPSYVHGNaNLLHIPSSFSRQYlnGLK--GSGTIWASDNEDSNWSIKYSFSNIRKRTTIHGGWNKFCKENKLQVGDVCVFEMMTQvNPHSFKI 241
                  8999******9996788**********96555..667*************************************************886556666666 PP

                  EE CS
           B3  95 kv 96 
                  ++
  Aradu.YSU0C 242 HI 243
                  65 PP
2B335.61.7e-112903641698
                  EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  + +pkkf+++++     +k +tl+     sW+vk+ ++++s    ++kGW +F+ + +L +gD++ Fkl++r++  ++v++f+
  Aradu.YSU0C 290 VPIPKKFIRRNERC--LGKNVTLKF-GRDSWTVKV-VNGGS----FSKGWVQFATECKLVVGDICRFKLSDRKNLVFHVSIFK 364
                  569********654..455566554.669******.34444....89**********************99999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100174.62E-8178No hitNo description
PROSITE profilePS508638.741180IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-10187IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-8289IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-22140244IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-22142240IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-18144245No hitNo description
PfamPF023627.2E-19146244IPR003340B3 DNA binding domain
SMARTSM010193.4E-10146247IPR003340B3 DNA binding domain
PROSITE profilePS5086313.888147247IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-14266365IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.236275366IPR003340B3 DNA binding domain
SMARTSM010195.7E-5284366IPR003340B3 DNA binding domain
SuperFamilySSF1019369.61E-13285364IPR015300DNA-binding pseudobarrel domain
PfamPF023628.5E-9289364IPR003340B3 DNA binding domain
CDDcd100177.41E-12292364No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MIPKSFVRKY WERISNPIIL KLPNNREQEV YWSQRKNDEV WLENNWEKVV KLCHLEYEFL  60
LTFEYKETSS CFELKVYDKS ASQINYHSDC GVHETNHDYI VVDDIQKEPK RKRTNKAGIR  120
KSMLNNVREK IEMAEALSTK LKNPSFFLVL KPSYVHGNAN LLHIPSSFSR QYLNGLKGSG  180
TIWASDNEDS NWSIKYSFSN IRKRTTIHGG WNKFCKENKL QVGDVCVFEM MTQVNPHSFK  240
IHIIPVTQQS PRTPPHQFQE SESPNRQTNN QFEIRISKSK LKQFTSSVFV PIPKKFIRRN  300
ERCLGKNVTL KFGRDSWTVK VVNGGSFSKG WVQFATECKL VVGDICRFKL SDRKNLVFHV  360
SIFKEHRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.YSU0C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020988623.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A445B0Y90.0A0A445B0Y9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11472624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-12B3 family protein