PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.YL5JA
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 478aa    MW: 55932.2 Da    PI: 10.3733
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.YL5JAgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.72.7e-10321012498
                  HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
           B3  24 eehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                  e++g++   s  l l+ ++g +W+v+   +++ g++++++GWkeFv    L+ g  + F+   +  + +++v +f+
  Aradu.YL5JA  32 EKYGSD--LSNPLYLKPPDGTEWRVEW--TNHNGEILFKNGWKEFVAYYSLDHGHLLWFE--CNiGTSHMKVNIFD 101
                  566655..566799*************..*******************************..55577778999987 PP
2B3413.3e-132703541299
                  HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +++  +++ kf +++ ++++++  +++     + + vkliyr +s+  ++++GW+ F++a +L++gD+++Fkl++r++  l v+++r+
  Aradu.YL5JA 270 TRAPCYFSTKFYRKYFENNPQNANIRFG---KKLFPVKLIYRPSSCVAFISAGWNLFARAIKLQAGDICLFKLINRKDPVLDVHICRR 354
                  4444577889999996666777777754...499****************************************999999******98 PP
3B350.34.4e-163944761399
                  TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  ++r  l+  f +++ +k++++  ++l+    +sW  ++iy+ +s+  ++++GW++F++an+L++gD++vF+l+++++  + v+++r+
  Aradu.YL5JA 394 RSRPNLSAIFYRKYFKKNQQN--VKLQ-FGKESWPATIIYNPTSKNSFISAGWSSFARANKLEAGDVCVFELINEKDL-FDVHICRA 476
                  556677888999997665555..5543.3669*****************************************97444.69999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.86910103IPR003340B3 DNA binding domain
SMARTSM010190.4721103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-1331104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-1331110IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-732101IPR003340B3 DNA binding domain
CDDcd100176.20E-838101No hitNo description
SuperFamilySSF1019363.92E-12254354IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-14256354IPR015300DNA-binding pseudobarrel domain
CDDcd100173.39E-10258353No hitNo description
SMARTSM010191.7E-5260355IPR003340B3 DNA binding domain
PfamPF023626.9E-12270355IPR003340B3 DNA binding domain
PROSITE profilePS508638.783301355IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.1E-21375477IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.32E-18376476IPR015300DNA-binding pseudobarrel domain
CDDcd100172.49E-16381475No hitNo description
PROSITE profilePS5086311.476382477IPR003340B3 DNA binding domain
SMARTSM010191.1E-13383477IPR003340B3 DNA binding domain
PfamPF023628.1E-14398476IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MKTLHTNVCH LIVIMVANTR FITLQKLPIS TEKYGSDLSN PLYLKPPDGT EWRVEWTNHN  60
GEILFKNGWK EFVAYYSLDH GHLLWFECNI GTSHMKVNIF DMNCLQIEYP ANDQIKEQLT  120
SRGQQPVKKQ EEQKIRDMDS SRNTQNMRLN EGPQKKRLNE SLPREVWDQP RKKLRALVSS  180
GSKDRHLEND TQIKDVERSF NSHGIKSKEK NHEMPVSVNQ DSNGKRNRRR KDSESPVMPC  240
PTRLESLKEA KKFKWEKPSF IIKITQRSQT RAPCYFSTKF YRKYFENNPQ NANIRFGKKL  300
FPVKLIYRPS SCVAFISAGW NLFARAIKLQ AGDICLFKLI NRKDPVLDVH ICRRQRRESL  360
KPVTHGIQLF KEVKELNSHN PSFMVKIRDS DPRRSRPNLS AIFYRKYFKK NQQNVKLQFG  420
KESWPATIIY NPTSKNSFIS AGWSSFARAN KLEAGDVCVF ELINEKDLFD VHICRAQC
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.YL5JA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015946909.10.0B3 domain-containing protein LOC_Os12g40080 isoform X2
TrEMBLA0A444XAP50.0A0A444XAP5_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15597210
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-16B3 family protein