PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.YH9QH

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

WRKY

Protein Properties

Length: 405aa MW: 45093.1 Da PI: 9.3012

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.YH9QH	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.6	8.3e-31	137	196	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++prsYYrCt + +Cpv+k+v+r+a+d +++++tYeg+Hnh+ Aradu.YH9QH 137 MNDGCQWRKYGQKIAKGNPCPRSYYRCTVSsSCPVRKQVQRCAQDMSILITTYEGTHNHP 196 58************************999**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.7E-32	122	198	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-27	130	198	IPR003657	WRKY domain
PROSITE profile	PS50811	29.218	132	198	IPR003657	WRKY domain
SMART	SM00774	5.5E-36	137	197	IPR003657	WRKY domain
Pfam	PF03106	2.5E-27	138	196	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MYMHQDTKIE STTEGGMGKL EVLLRNGAND EDSSSSSSSL VQKEYLFDII FQQQKQEATT 60 KEGINNNNED SDEELVSLSL GVSSSEKLLT EMWPPSKVLK TTKNNGEGNE ASHHHYHNTR 120 LKKARVSIRA RCDTQTMNDG CQWRKYGQKI AKGNPCPRSY YRCTVSSSCP VRKQVQRCAQ 180 DMSILITTYE GTHNHPLPSS ATPMASATSA AASVLRSSSL SSSSSQQGIV PNSETTTIVN 240 PNNNNNTTLI RPQQFYLFNS SMISTSNNNF HPTITLDLIT KPPTSSSSSI PKYSPTNLDF 300 SSTTTTFSPL QYSTQHSSSS RYYWNLNKNG KQPLIQYHQG HYPYQQNCMP IIFQKPLHAD 360 CYASSALNNN QQGNITKSLL TSQPSKGSYA SPPSKKSYQF LEKRK

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MYMHQDTKIE STTEGGMGKL EVLLRNGAND EDSSSSSSSL VQKEYLFDII FQQQKQEATT  60
KEGINNNNED SDEELVSLSL GVSSSEKLLT EMWPPSKVLK TTKNNGEGNE ASHHHYHNTR  120
LKKARVSIRA RCDTQTMNDG CQWRKYGQKI AKGNPCPRSY YRCTVSSSCP VRKQVQRCAQ  180
DMSILITTYE GTHNHPLPSS ATPMASATSA AASVLRSSSL SSSSSQQGIV PNSETTTIVN  240
PNNNNNTTLI RPQQFYLFNS SMISTSNNNF HPTITLDLIT KPPTSSSSSI PKYSPTNLDF  300
SSTTTTFSPL QYSTQHSSSS RYYWNLNKNG KQPLIQYHQG HYPYQQNCMP IIFQKPLHAD  360
CYASSALNNN QQGNITKSLL TSQPSKGSYA SPPSKKSYQF LEKRK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-21	124	198	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.YH9QH

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015956798.2	0.0	probable WRKY transcription factor 72
Swissprot	A0A3Q7GFB5	2e-59	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A444ZUP6	0.0	A0A444ZUP6_ARAHY; Uncharacterized protein
STRING	GLYMA01G05050.1	2e-83	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF650	34	134

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	3e-46	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]