PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.YCK5T
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 414aa    MW: 47115.6 Da    PI: 8.3254
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.YCK5TgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.44.3e-3152156199
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                  f+kv tpsdv+k++rlv+pk++ae++    + ++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l
  Aradu.YCK5T  52 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSTSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGEnYRHRL 149
                  89***************************955567889*************************************************55466678888 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  ++ ++r+
  Aradu.YCK5T 150 YIDWRRR 156
                  8888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-4145160IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.19E-3048157IPR015300DNA-binding pseudobarrel domain
CDDcd100175.24E-2550151No hitNo description
PfamPF023621.5E-2852156IPR003340B3 DNA binding domain
PROSITE profilePS5086314.31152155IPR003340B3 DNA binding domain
SMARTSM010194.0E-2452157IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MDLSLGTNIN HHEGINNFQG YSSSSAAATT TTTNNTNLQP PLPAPAEKEH MFDKVVTPSD  60
VGKLNRLVIP KQHAEKYFPL DSTSNEKGLL LNFEDRNGKL WRFRYSYWNS SQSYVMTKGW  120
SRFVKEKKLD AGDIVSFQRG VGENYRHRLY IDWRRRPDNH HHHHHNLHGG LDFPSSSSNF  180
ITPFFIPSQA SSHYSTIRYG GRFYSLPPPQ SQPQPQPQPQ PQMMMSPRHH HYYPIHHGGY  240
GGYNHPHSNE LFYLRSTTST TLPSPPPPPS SSSMSMVDHH HYHQGLLARQ QQEQEQERGS  300
PMIIDSVPIA HHFHHHGGGG GNGNNGSNSN SNNNSNNNNS AGKRLRLFGV NMECASSSST  360
TTQEDHQEQE QEDPKCFTLF SSTNSRDGED QRRRIREQAA NFFDLDPSLQ FRQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-65461572114B3 domain-containing transcription factor NGA1
5os9_B6e-65461572114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.YCK5T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015948137.10.0B3 domain-containing protein Os03g0120900
RefseqXP_020990491.10.0B3 domain-containing protein Os03g0120900
TrEMBLA0A445AD000.0A0A445AD00_ARAHY; Uncharacterized protein
STRINGAES850001e-101(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.16e-67B3 family protein