PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.YCF1P

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 445aa MW: 50901.6 Da PI: 8.7088

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.YCF1P	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47	8.7e-15	49	133	3	91
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 + +YAk +GFs+r++ ++++ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k g w ++k++l+H H+++p Aradu.YCF1P 49 FGSYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHLHPCCP 133 568*********998776..8889*********998877...8999**********998879************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-12	49	133	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.902	278	314	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.6E-4	287	311	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.5E-4	289	316	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MDHSNEDCQL NPGKVDYEFE SNEVPEKLRA CVFTVYDFKG HSVVELLRFG SYAKAAGFST 60 RVRCTNRKGN EIKNQLITCS REGKWKSKIS PTEKTNPTAG LNCPARIYIH TLKDVGAWII 120 SKVVLDHLHP CCPSKAEMLK QHRELSMSIR RTIENNEEAD HHFWAGMRST QRSESMHSFF 180 NKYITRNSSL IQFVKQYDNY LGSKEESDAA DFHTVIPCAT KSSIEAQFQD AYTHAKFKEV 240 QAQFRGKANC ITRLKNFALG YSIYEVGEQV SSSIFNKFAV TYDSVAAEVK CQCLLFELRG 300 ILCHHALSVL SFEQVSQVSP RYILERWSKK VKRRHTHIKS SHDEPLMEPR SKRFDQLVFR 360 SQNICEFASE SEELTAILHR AYDNARFKVG QTDCKYHKEK KTKVLSEINL FDAASAAHSN 420 SSQYQGHVMN YQFRVPAAGD NSLGV

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MDHSNEDCQL NPGKVDYEFE SNEVPEKLRA CVFTVYDFKG HSVVELLRFG SYAKAAGFST  60
RVRCTNRKGN EIKNQLITCS REGKWKSKIS PTEKTNPTAG LNCPARIYIH TLKDVGAWII  120
SKVVLDHLHP CCPSKAEMLK QHRELSMSIR RTIENNEEAD HHFWAGMRST QRSESMHSFF  180
NKYITRNSSL IQFVKQYDNY LGSKEESDAA DFHTVIPCAT KSSIEAQFQD AYTHAKFKEV  240
QAQFRGKANC ITRLKNFALG YSIYEVGEQV SSSIFNKFAV TYDSVAAEVK CQCLLFELRG  300
ILCHHALSVL SFEQVSQVSP RYILERWSKK VKRRHTHIKS SHDEPLMEPR SKRFDQLVFR  360
SQNICEFASE SEELTAILHR AYDNARFKVG QTDCKYHKEK KTKVLSEINL FDAASAAHSN  420
SSQYQGHVMN YQFRVPAAGD NSLGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.YCF1P

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	1e-162	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A445A1M9	0.0	A0A445A1M9_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	2e-27	FAR1 family protein