PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.Y65RC | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 169aa MW: 19962.3 Da PI: 6.0264 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.6 | 6.2e-15 | 21 | 110 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsefelvvkv 96 ffkv +++ ++ + lpkkf++++g++ s l l+ ++g +W+v ++g++++++GWkeFv L++g ++ F+++ g + + v++ Aradu.Y65RC 21 FFKVILRKTLQDEN-FKLPKKFTRKYGSD--LSNPLYLKPPDGTEWRVDW--IIHDGGILFKEGWKEFVAYYSLDDGHVLWFEYNiG--TSRIEVQI 110 67777666666555.***********988..6777***************..99999**************************9734..33345655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.8E-19 | 15 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-19 | 16 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.48E-13 | 20 | 112 | No hit | No description |
PROSITE profile | PS50863 | 12.055 | 20 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.5E-12 | 21 | 110 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.0E-11 | 21 | 114 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MTSSNYQQNE HSPSNSSVIR FFKVILRKTL QDENFKLPKK FTRKYGSDLS NPLYLKPPDG 60 TEWRVDWIIH DGGILFKEGW KEFVAYYSLD DGHVLWFEYN IGTSRIEVQI SDMSGLQIEY 120 PVNDQIKEHP PQHRGEPVER PKEQQTRDVD SSPNTQNMRF NEVRQEKIE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.Y65RC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020988908.1 | 1e-124 | B3 domain-containing protein At3g18960-like | ||||
TrEMBL | A0A445B1P1 | 1e-110 | A0A445B1P1_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 3e-18 | B3 family protein |