PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.Y02KH | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 91aa MW: 10373 Da PI: 10.7824 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.4 | 1e-24 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ienk++rqvtfskR++g+ KKA+E+S LCda+ a iif +tgkl +ss Aradu.Y02KH 9 KQIENKIRRQVTFSKRKTGLKKKAHEISLLCDAQLAFIIFNTTGKLSHFSS 59 78**********************************************996 PP | |||||||
2 | K-box | 35.6 | 4e-13 | 57 | 90 | 31 | 64 |
K-box 31 LqreqRhllGedLesLslkeLqqLeqqLekslkk 64 + R+l G+dL+sLsl+eLq+Le+qLe slk+ Aradu.Y02KH 57 FSSHSRNLAGNDLDSLSLRELQNLEHQLEASLKQ 90 55778***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.7E-30 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.315 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-26 | 2 | 82 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.3E-22 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 6.771 | 33 | 91 | IPR002487 | Transcription factor, K-box |
PRINTS | PR00404 | 1.2E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.7E-9 | 53 | 90 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MGRGKVELKQ IENKIRRQVT FSKRKTGLKK KAHEISLLCD AQLAFIIFNT TGKLSHFSSH 60 SRNLAGNDLD SLSLRELQNL EHQLEASLKQ Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-17 | 1 | 75 | 1 | 68 | MEF2C |
5f28_B | 2e-17 | 1 | 75 | 1 | 68 | MEF2C |
5f28_C | 2e-17 | 1 | 75 | 1 | 68 | MEF2C |
5f28_D | 2e-17 | 1 | 75 | 1 | 68 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. | |||||
UniProt | Probable transcription factor that promotes early floral meristem identity in synergy with APETALA1 and CAULIFLOWER. Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:28586421). Seems to be partially redundant to the function of APETALA1 and CAULIFLOWER in the up-regulation of LEAFY. Is also required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:28586421). Probably not required for fruit elongation but instead is required to prevent ectopic activity of IND. Represses SAUR10 expression in stems and inflorescence branches (PubMed:28586421). {ECO:0000269|PubMed:10648231, ECO:0000269|PubMed:15035986, ECO:0000269|PubMed:28586421, ECO:0000269|PubMed:9502732}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.Y02KH |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Dramatically up-regulated upon the transition from vegetative to reproductive development. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029145265.1 | 2e-48 | truncated transcription factor CAULIFLOWER A | ||||
Swissprot | D7SMN6 | 4e-30 | FULL_VITVI; Agamous-like MADS-box protein FUL-L | ||||
Swissprot | Q38876 | 3e-30 | AGL8_ARATH; Agamous-like MADS-box protein AGL8 | ||||
TrEMBL | A0A444X8W3 | 8e-45 | A0A444X8W3_ARAHY; Uncharacterized protein | ||||
STRING | Aquca_002_00913.1 | 9e-35 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 1e-32 | AGAMOUS-like 8 |