PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.XVI4W
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 387aa    MW: 42654.3 Da    PI: 8.1268
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.XVI4WgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.96.3e-12223325
                 S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
                 + lCr+f+r G C+yGdrCkF+H
  Aradu.XVI4W  2 RDLCRNFQR-GSCQYGDRCKFIH 23
                 579******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.8E-5125IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9223IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-9324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389426IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MRDLCRNFQR GSCQYGDRCK FIHAVAQQGK PNNSFHGFGG QNSFYQQQQQ QQNVNPFGFG  60
SKSASQPHQQ QQKTNPFGFG VQNNINNSQF KGTPQXXXIS LLKTNGLGVA LRGNLITTPY  120
RRIMNPEVCK RQIAEDFKQE RPLWILTCYG HSKGAPCDIV GDFSYEELRA AAYEDVKRGM  180
NLQSIVERER NTLNSKLAEF EKLLSEPYRM PFNPAVNSQN HQNANPFSMP MQNDGQHNAN  240
PFSITTQNNG PVSVSSFSQL GASLNTGFDR PSAQAPNTPP QSSFFGSGGN TFTPNTANIS  300
GRGFSGAPSS PFSTPAESTM FPSSTSQQSS FGFNDLSSTP MFQTTPDVQS SSMSQGENVS  360
TDLSIWLKEK WNPGEIPEEA PPDSVVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.XVI4W
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025686959.10.0zinc finger CCCH domain-containing protein 16
TrEMBLA0A445E2910.0A0A445E291_ARAHY; Uncharacterized protein
STRINGXP_004505582.11e-142(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46002333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.11e-61C3H family protein