PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.XPS1Y
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CO-like
Protein Properties Length: 399aa    MW: 45440.5 Da    PI: 5.5066
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.XPS1YgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.32.8e-071457340
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 +r C+ + + ++++fC  ++ +lC+ C    H+       H++v
  Aradu.XPS1Y 14 ARACDSCLRVRARWFCAADDAFLCHGCDNLVHSAnqlasrHERV 57
                 578******99*********************657788888876 PP
2CCT675e-23341384144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  Aradu.XPS1Y 341 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRT 384
                  9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.0821259IPR000315B-box-type zinc finger
SMARTSM003366.2E-81259IPR000315B-box-type zinc finger
PfamPF006431.1E-51457IPR000315B-box-type zinc finger
CDDcd000211.58E-71559No hitNo description
PfamPF062039.0E-18341383IPR010402CCT domain
PROSITE profilePS5101715.993341383IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MKGSSSGALG AKTARACDSC LRVRARWFCA ADDAFLCHGC DNLVHSANQL ASRHERVRLQ  60
TSSSSAKITT TAWHSGFTRK ARTPRHHNKS TFLMQQQQDA EKEEEAVFNN YQGSVFLDPV  120
VPDLGSEDIY ESEEQILCRV PVFHPFDDDS VLCSVHNNEI MKKKKKKMKK MNNDDGEEEG  180
EGEVPCTFGL ENFSDLADVE NLLHIEDDST MIKVKDELQV TNNDDDCNLE SILDWNIDTS  240
DQSMMMAVVE HDQEEEENNN KVEIIKKEKF LRLNYEEVIS AWASQGSPWT TGNPPNFNFD  300
DCWPHYMGSS GGVDNNVAWC DGEEVRNMRW HQIGGVDDGG REARVSRYRE KRRTRLFAKK  360
IRYEVRKLNA EKRPRMKGRF VKRTSSSSSS FVEGAITTT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161169KKKKKKMKK
2351367RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.XPS1Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0980039e-41BT098003.1 Soybean clone JCVI-FLGm-26B17 unknown mRNA.
GenBankBT0985699e-41BT098569.1 Soybean clone JCVI-FLGm-23A18 unknown mRNA.
GenBankHM0689039e-41HM068903.1 Glycine max CONSTANS-like zinc finger protein (COL21) mRNA, complete cds.
GenBankHM0689059e-41HM068905.1 Glycine max CONSTANS-like zinc finger protein (COL23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015966684.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A445D2Q20.0A0A445D2Q2_ARAHY; Uncharacterized protein
STRINGAET053251e-119(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-77B-box type zinc finger protein with CCT domain