PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.XM1M6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | ARF | ||||||||
Protein Properties | Length: 815aa MW: 91055.9 Da PI: 6.8875 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.8 | 5.5e-20 | 155 | 286 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....................................---..--SEEEEEETTS-EEEEEE..EEETTEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....................................ggkkeesktltledesgrsWevkliyrkksgryvlt 62 f+k lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt Aradu.XM1M6 155 FCKSLTASDTSTHGGFSVPRRAAEDCfpplvsnlnsslllttlfvlklyvtleiryinnsdyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLT 251 89******************************9999999999999999999999999999853.3345679*************************** PP TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 63 kGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +GW+ Fv +++L +gD v+F + +++el+++++r+ Aradu.XM1M6 252 TGWSMFVGQKKLVSGDAVLFL--RGENGELRLGIRRA 286 *********************..4499999****996 PP | |||||||
2 | Auxin_resp | 116 | 3.3e-38 | 312 | 393 | 2 | 82 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 ++a+stks+F+v+Y+Pras++ Fvv+++k++k+++++v++G+Rfkm fe+++s+err+ Gtv+g+s++dp+rWp+SkWr+L Aradu.XM1M6 312 SDAISTKSMFHVFYSPRASHAPFVVPYKKYVKSINNPVTIGTRFKMTFEMDESPERRCgGGTVIGMSEVDPYRWPKSKWRCL 393 6799******************************************************99*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.02E-14 | 148 | 195 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-35 | 149 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.26E-17 | 153 | 285 | No hit | No description |
SMART | SM01019 | 1.8E-18 | 155 | 287 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-18 | 155 | 286 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.505 | 189 | 287 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.18E-22 | 215 | 297 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF06507 | 5.0E-33 | 312 | 393 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 23.264 | 686 | 768 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.45E-10 | 689 | 765 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 815 aa Download sequence Send to blast |
MDIDLNHAVV VSSEDDDESN VECDKGASSP SPSGSAMSSY LELWHACAGP LTSLPKKGNV 60 VVYFPQGHLE QASSFSHFAP IDVPNYDLQP QILCRVVNVQ LLANKENDEV YTQITLLPQS 120 DELEDKNLEG KEVEEIGGDE EGNGVPTLKP TTHMFCKSLT ASDTSTHGGF SVPRRAAEDC 180 FPPLVSNLNS SLLLTTLFVL KLYVTLEIRY INNSDYKQQR PSQELVAKDL HGVEWRFRHI 240 YRGQPRRHLL TTGWSMFVGQ KKLVSGDAVL FLRGENGELR LGIRRAIRPR NGLPGTVIGN 300 QNCYPNFLSS VSDAISTKSM FHVFYSPRAS HAPFVVPYKK YVKSINNPVT IGTRFKMTFE 360 MDESPERRCG GGTVIGMSEV DPYRWPKSKW RCLMVRWDED IDTNHQDRVS PWEIDPFASL 420 PPLSLQSFPR LKKLRTDGQA AAHSHLITGS SGLVDFEESV RSPKVLQGQE NAGFLSLYYG 480 CDTLTNRPRF EMSPLPHVAS TTGVRRGNTA ELMSVHPFSY AGFTETTRFP RVLQGQEIGP 540 LKSLRGKVDL SLGSWGKSNN SIGCTTFNFH QATKPQVLES SYFPYGDIHK KTAQTNMFYS 600 KPTNFHRENV SFNTHSNQGV IKRSEVGRTD VPNEHKKTMP GETCAPDMKI PDDSKNVKAK 660 VNGCKLFGFP LSGETTPQNL QNTAKRSCTK VHKQGSLVGR AIDLSRLSSY ADLLSELERL 720 FGMEGLLRDP DKGWRILYTD NENDIMVVGD DPWHEFCNVV CKIHIHSQEE VEKMTIGIIN 780 DETNSSLEEA PMIMEPSKSS SVGQPDYYSP TVLKV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-112 | 34 | 419 | 12 | 357 | Auxin response factor 1 |
4ldw_A | 1e-112 | 34 | 419 | 12 | 357 | Auxin response factor 1 |
4ldw_B | 1e-112 | 34 | 419 | 12 | 357 | Auxin response factor 1 |
4ldy_A | 1e-112 | 34 | 419 | 12 | 357 | Auxin response factor 1 |
4ldy_B | 1e-112 | 34 | 419 | 12 | 357 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.XM1M6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015952369.1 | 0.0 | auxin response factor 4-like isoform X2 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A445E4H6 | 0.0 | A0A445E4H6_ARAHY; Auxin response factor | ||||
STRING | GLYMA12G07560.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5236 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |