PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.XD5SD

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

TCP

Protein Properties

Length: 180aa MW: 19168.7 Da PI: 9.9228

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.XD5SD	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	45.1	3.6e-14	15	71	38	95
TCP 38 eLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 eLG ++d++tieWLl+qa+p+i+++t+t ++++s++ s s+ +++ s ++ ++++a Aradu.XD5SD 15 ELGPKSDGQTIEWLLRQAEPSIIAATRTRTTPSSFSfV--SVSVRGGAGSLSSPSSTSA 71 8***************************9999966632..3333333233332222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	8.783	1	39	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.0E-10	15	73	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MKEERKHSDS WHPTELGPKS DGQTIEWLLR QAEPSIIAAT RTRTTPSSFS FVSVSVRGGA 60 GSLSSPSSTS AASSLDHKPL LAPTPFILGK RIRTDDDASA KDDGVSVGSL VGPGAPAGLW 120 ALPARPDFDQ IWSFAAAAPL LEMVVQSAMV SVSHSNKLLC SFTIGISSSN KPWEKLRRRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.XD5SD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020972772.1	3e-83	transcription factor TCP7-like
Swissprot	Q9FMX2	9e-38	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A445A795	2e-62	A0A445A795_ARAHY; Uncharacterized protein
STRING	XP_007142764.1	8e-51	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	4e-16	TCP family protein