PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.X3MYC
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NF-YA
Protein Properties Length: 212aa    MW: 23340.2 Da    PI: 9.7491
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.X3MYCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.91.5e-3276131258
    CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                   p+YVNaKQy++Il+RRq+Rakle+++kl +k+rkpylheSRh+hAl+R RgsgGrF
  Aradu.X3MYC  76 GPVYVNAKQYHGILRRRQSRAKLEAQNKL-IKNRKPYLHESRHRHALNRVRGSGGRF 131
                  69***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.2E-3773134IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.17874134IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.5E-2877131IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.8E-257799IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068607999IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.8E-25108131IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MKPFLSLNYP DTAFDCAQIE CDYSMAHSSY SYEDPLFAGS FVAYGPQGIN QPQMLPQMLG  60
LQSTRVALPL DLAEEGPVYV NAKQYHGILR RRQSRAKLEA QNKLIKNRKP YLHESRHRHA  120
LNRVRGSGGR FLSTKQFEQS NAEVATGAHS SSDPSKDASK VESHLLRTAG NASSITTCSD  180
RTSLSSNSVS RQPEAQLFLA GPANMGRAPV VR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-2375136263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.X3MYC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015954718.11e-157nuclear transcription factor Y subunit A-3 isoform X1
RefseqXP_015954719.11e-157nuclear transcription factor Y subunit A-3 isoform X1
RefseqXP_015954720.11e-157nuclear transcription factor Y subunit A-3 isoform X1
RefseqXP_025688691.11e-157nuclear transcription factor Y subunit A-3 isoform X1
RefseqXP_025688692.11e-157nuclear transcription factor Y subunit A-3 isoform X1
RefseqXP_025688693.11e-157nuclear transcription factor Y subunit A-3 isoform X1
TrEMBLA0A445DWF11e-156A0A445DWF1_ARAHY; Uncharacterized protein
STRINGGLYMA09G07960.41e-100(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.13e-40nuclear factor Y, subunit A3