PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.X30I1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 315aa MW: 35578.4 Da PI: 7.4276 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.8 | 3.9e-18 | 92 | 145 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Aradu.X30I1 92 KKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 145 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 131.9 | 2.4e-42 | 91 | 183 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqvk+LE+sFe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr++da+k++n++L++++++L++++++ Aradu.X30I1 91 EKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFDAVKADNDALQAQNHKLHTQIMA 183 69**************************************************************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.45E-19 | 82 | 149 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.394 | 87 | 147 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-18 | 90 | 151 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.9E-15 | 92 | 145 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.91E-15 | 92 | 148 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-19 | 94 | 154 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.3E-5 | 118 | 127 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 122 | 145 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.3E-5 | 127 | 143 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.4E-16 | 147 | 187 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0048826 | Biological Process | cotyledon morphogenesis | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
RHIQQKLHKN MAFFPANFML QTPHHHHQDE HQPPPSLNSI LTSCAPQEYH HGAGGGYLGK 60 RSMSFSGIEV GEVEGNGGEE EVSDDGSQAG EKKRRLNMEQ VKTLEKSFEL GNKLEPERKM 120 QLARALGLQP RQIAIWFQNR RARWKTKQLE KDYDLLKRQF DAVKADNDAL QAQNHKLHTQ 180 IMALKSREPT ESINLNKETE GSSSNRSDNS SDIKLDISTR TPTTTTTTSA IDSPLSTHQN 240 NNNNSRTLFP SPSNNAAAAA AATARPTEVA QLFQTTPHHH HHHHHMVKEE SLSNMFCAID 300 DQTGLWPWLE HQNFN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 147 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00225 | DAP | Transfer from AT1G69780 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.X30I1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015956948.1 | 0.0 | homeobox-leucine zipper protein ATHB-13 isoform X2 | ||||
Refseq | XP_015956949.1 | 0.0 | homeobox-leucine zipper protein ATHB-13 isoform X1 | ||||
Swissprot | Q8LC03 | 1e-107 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A444ZUT7 | 0.0 | A0A444ZUT7_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA08G40970.1 | 1e-157 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1271 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-83 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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