PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.X0I6L
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 273aa    MW: 31359.4 Da    PI: 7.2322
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.X0I6LgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.81.1e-26959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien++ rqvtfskRrng+lKK +ELSvLCda++ +i+fs+tgkl+ yss
  Aradu.X0I6L  9 KRIENTTTRQVTFSKRRNGLLKKTNELSVLCDAQIGLIVFSNTGKLFHYSS 59
                 79***********************************************96 PP
2K-box57.94.5e-20861701296
        K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                  + +e l +e+a L++++ +L+  + ++lGe++  L ++eL +Le+++++s+ +iR+++nell +q+e+l++ke+ l++en +L++
  Aradu.X0I6L  86 HLQEDLLTEMAMLRRQNLSLEMGIQRYLGEGIACLRYEELTKLEDEVQSSVARIRKRQNELLQQQLENLRRKERILEDENCNLSN 170
                  3345667899************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.3161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.07E-32289IPR002100Transcription factor, MADS-box
CDDcd002655.10E-42276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-29323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-1685169IPR002487Transcription factor, K-box
PROSITE profilePS5129713.12788179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTTRQVT FSKRRNGLLK KTNELSVLCD AQIGLIVFSN TGKLFHYSSH  60
PYRMDQIIEK YQRSTGTRIT RHGHSHLQED LLTEMAMLRR QNLSLEMGIQ RYLGEGIACL  120
RYEELTKLED EVQSSVARIR KRQNELLQQQ LENLRRKERI LEDENCNLSN WEQQTAVLEF  180
ERAAASNGGD NKAVMDHHHH HHQLPFYDDE QASASAGTIL QLGAPHVPQQ LHPYPYPYLQ  240
LAQPNVDHDS LTGLLMGPSK WVIEKDGGVP FDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-19171169MEF2C
5f28_B2e-19171169MEF2C
5f28_C2e-19171169MEF2C
5f28_D2e-19171169MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.X0I6L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015946812.10.0MADS-box protein GGM13 isoform X1
RefseqXP_025625060.10.0MADS-box protein GGM13 isoform X1
TrEMBLA0A444XB081e-135A0A444XB08_ARAHY; Uncharacterized protein
STRINGXP_004498126.11e-104(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.24e-44MIKC_MADS family protein