PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.WP14Z
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NF-YA
Protein Properties Length: 543aa    MW: 59442.2 Da    PI: 6.8242
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.WP14ZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.32.2e-32376432158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +ksrkpylheSRh+hA+rR+Rg+gGrF
  Aradu.WP14Z 376 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKSRKPYLHESRHQHAMRRARGTGGRF 432
                  69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.5E-36374435IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.727375435IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.4E-28377432IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.1E-23378400IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860380400IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.1E-23409432IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MVQQVMKLAV EVGAIGGGSG YSTFVQDNSP LAPPTLYCAS LVEHMEVDTE ESNEEYVVES  60
DKSVFFLDDE EIVLETSVGG TIRSRRGHVV KVAVKFGTMW SPHRGHAFRG FLLVKCVSRG  120
PQFPFIEGAL IPLPAVISPL THSPTRYRRF PLALHSFSHT KRFALPPAHS VPLLPLSATL  180
ALLNFLSDSE DPKSRVFWLW FFPDMQSKSE TANRLRSDPH SFQPSGVCSE PWWHGGGYSA  240
IPQAMPGANA SNSSSLECPN GESESNEEGQ SLSNSGMNEE DDDAAKDSQP ADPNQSGNYG  300
QENQGMQHSA PSMREEGLAQ APQLELVGHS IACATNPYQD PYYGGMMAAY GPQQLGFAPF  360
IGMPHARMPL PLEMAQEPVY VNAKQYQGIL RRRQARAKAE LEKKLIKSRK PYLHESRHQH  420
AMRRARGTGG RFAKKSEVEG SNKGKEKDGS GPVLSSQSIS SSGSEPLPCD SNQTWNSPNV  480
QLNARGSKVH DKYENGSGSY HSHNGLQSYH LHSGDRVDEG DCSGQQRGSI TNEHASARRL  540
AIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-18376432258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.WP14Z
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015972671.10.0nuclear transcription factor Y subunit A-1
RefseqXP_015972734.10.0nuclear transcription factor Y subunit A-1
RefseqXP_025690366.10.0nuclear transcription factor Y subunit A-1
RefseqXP_025690375.10.0nuclear transcription factor Y subunit A-1
SwissprotQ9LXV55e-87NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLA0A445EW810.0A0A445EW81_ARAHY; Uncharacterized protein
STRINGGLYMA18G07890.21e-179(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.42e-82nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]