PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.WJ2ZP
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CO-like
Protein Properties Length: 430aa    MW: 48100.6 Da    PI: 5.4965
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.WJ2ZPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.17.3e-081962340
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 +r C+ + + ++++fC  ++ +lC+ C    H+       H++v
  Aradu.WJ2ZP 19 ARACDSCLRRRARWFCAADDAFLCHACDNLVHSAnqlasrHERV 62
                 578*****************************657788888876 PP
2CCT66.76.4e-23372415144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  Aradu.WJ2ZP 372 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRS 415
                  9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.2E-101764IPR000315B-box-type zinc finger
PROSITE profilePS5011910.6081764IPR000315B-box-type zinc finger
PfamPF006431.3E-61962IPR000315B-box-type zinc finger
CDDcd000215.50E-82064No hitNo description
PfamPF062039.8E-18372414IPR010402CCT domain
PROSITE profilePS5101715.993372414IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MKEAAATATT ASALGAKTAR ACDSCLRRRA RWFCAADDAF LCHACDNLVH SANQLASRHE  60
RVRLQTASCK LTNKVTTAHA WHSGFTRKAR TPRHNNNKHL ALQQRLKDQV LFNTACVLPV  120
VPELGVEETA LLDDHESEEQ LLCRVPVFDP FDAELCNDVY GEVRDEKNHE ERGCCDDLES  180
FSEFLPSDMD LAEFAADVET LLGSGIDEDS LGIDCKEEVQ REDACVRAET TINIKEGAMV  240
MVKVKDEELD SDTASHLQSV FDITNDDEFD WNIESVLLSA EEKATTAAPV SNNSDSVGEE  300
KKRDIFLRLN YEEVINAWAS QGSPWTTGTP PPFNPHDHSW LNFLDPSGGD VHQCSSYGDG  360
RSVRGHVGDG GREARVSRYR EKRRTRLFAK KIRYEVRKLN AEKRPRMKGR FVKRSCLVGG  420
ATSSFQPSYN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1382398RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.WJ2ZP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015954350.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A445DXB50.0A0A445DXB5_ARAHY; Uncharacterized protein
STRINGAET053251e-151(Medicago truncatula)
STRINGXP_007160372.11e-151(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.16e-93B-box type zinc finger protein with CCT domain