PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.WAU1C
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 114aa    MW: 12952.2 Da    PI: 8.7514
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.WAU1CgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.43.4e-15501123599
                  EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +++l+    +sW  ++iy+ +s+ +++ +GW++F++a +L++gD++vF+l+++++  + v+++r+
  Aradu.WAU1C  50 DVKLQ-FGKKSWPATIIYNPSSKNTFILAGWNSFARASKLEAGDVCVFELVNKKDL-FDVHICRA 112
                  55543.3669**************99999*********************986444.69999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010194.0E-1021113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-1535113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-1337112IPR015300DNA-binding pseudobarrel domain
CDDcd100177.76E-1541111No hitNo description
PfamPF023625.4E-1348112IPR003340B3 DNA binding domain
PROSITE profilePS5086311.16658113IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MTKHNMPCKL LSASLYLVLQ IFITIFDHTD SKMGCDAVFI SYLLQKNQQD VKLQFGKKSW  60
PATIIYNPSS KNTFILAGWN SFARASKLEA GDVCVFELVN KKDLFDVHIC RAQC
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.WAU1C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016182534.18e-41B3 domain-containing protein LOC_Os12g40080-like
RefseqXP_025624966.16e-41B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_025624967.12e-41B3 domain-containing protein Os12g0591400 isoform X2
RefseqXP_025681366.18e-41B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A444ZSV67e-50A0A444ZSV6_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15597210
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-07related to vernalization1 1