PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.W71G4
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TALE
Protein Properties Length: 390aa    MW: 44208 Da    PI: 6.119
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.W71G4genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.71.7e-073233552254
                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   +yp++e++++L +++gL+ +q+ +WF N+R +
  Aradu.W71G4 323 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 355
                  59*****************************87 PP
2ELK29.41.8e-10276297122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELKh+L+++Y+ +++++++E++
  Aradu.W71G4 276 ELKHELKQGYKDKIVDIREEIL 297
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.3E-18110154IPR005540KNOX1
PfamPF037907.5E-18112153IPR005540KNOX1
SMARTSM012564.8E-24163218IPR005541KNOX2
PfamPF037911.3E-17170217IPR005541KNOX2
SMARTSM011885.1E-4276297IPR005539ELK domain
PfamPF037891.3E-5276297IPR005539ELK domain
PROSITE profilePS512139.969276296IPR005539ELK domain
PROSITE profilePS5007111.612296359IPR001356Homeobox domain
SMARTSM003891.2E-10298363IPR001356Homeobox domain
SuperFamilySSF466894.71E-16298361IPR009057Homeodomain-like
CDDcd000866.38E-11299360No hitNo description
Gene3DG3DSA:1.10.10.608.2E-25303360IPR009057Homeodomain-like
PfamPF059201.1E-17316355IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MAFRDHQPHE ITFQSFTDEQ HLNHNRDMQR MLTLSGAGDG GPAPTWLNNV RQQNFLHLQP  60
NASSARNDDV RDMMAAEATS AEKSMDHRKN YLQQQRTMTE SNNCDSEDAA EYKADILGHP  120
LYEQLLSAHV SCLRIATPVD QLPRIDAQLQ QSQRVVEKYS AHGNNGALNE KELDNFMTHY  180
VLLLCAFKEQ LQQHVRVHAM EAVMACWELE QSLQSLTGVS PGEGTGTTMS DDEDDQAAES  240
NGNLYEGCLD GADSLSFGPL VPTETERSLM ERVRQELKHE LKQGYKDKIV DIREEILRKR  300
RAGKLPGDTT SLLKAWWQSH SKWPYPTEED KARLVQETGL QLKQINNWFI NQRKRNWHTN  360
PSSSTGGKSK RKNTNNNSGG AGETNNQSFM
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.W71G4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015955150.10.0homeobox protein knotted-1-like 2 isoform X2
SwissprotP480001e-159KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A445DUN80.0A0A445DUN8_ARAHY; Uncharacterized protein
STRINGXP_004514060.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-161KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]