PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.W3YFQ | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | GATA | ||||||||
Protein Properties | Length: 252aa MW: 27379.5 Da PI: 7.5648 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51 | 1.9e-16 | 164 | 201 | 1 | 36 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 C++Cg ++ Tp++Rrgp+g+++LCnaCGl++ +g++ Aradu.W3YFQ 164 CTHCGISSkaTPMMRRGPSGPRSLCNACGLFWSNRGTM 201 *****9999*************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 3.9E-5 | 33 | 63 | IPR010399 | Tify domain |
Pfam | PF06200 | 4.6E-6 | 37 | 56 | IPR010399 | Tify domain |
Pfam | PF06203 | 3.4E-16 | 96 | 138 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.65 | 96 | 138 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 10.264 | 158 | 209 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.5E-14 | 158 | 211 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.95E-12 | 161 | 218 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.4E-16 | 162 | 205 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.04E-14 | 163 | 209 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 164 | 191 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.2E-13 | 164 | 201 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MYGSMNDGAG GVVEDADTVY VSGGGGPDMS IIPCEDSSQL TLSFRGQVYV FDSVQAVLLL 60 LGGCEMPSSG SQCAELSPQN QRGAVEFPGR CSQPHRAASL NRFRQKRKER CFDKKVRYSV 120 RQEVALRMQR NKGQFTSSKK QDGANSCGSD QESMQDAVQS ETSCTHCGIS SKATPMMRRG 180 PSGPRSLCNA CGLFWSNRGT MRDLSKRNQE HTLALPEPVN EGNNTDCRTA VPENINVTAF 240 SENDNASLAT DR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00451 | DAP | Transfer from AT4G24470 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.W3YFQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015935014.1 | 0.0 | GATA transcription factor 25 | ||||
Swissprot | Q9LRH6 | 2e-86 | GAT25_ARATH; GATA transcription factor 25 | ||||
TrEMBL | A0A445BTU3 | 1e-180 | A0A445BTU3_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A445C934 | 1e-180 | A0A445C934_ARAHY; Uncharacterized protein | ||||
STRING | XP_007141281.1 | 1e-123 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2836 | 33 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.2 | 9e-89 | GATA-type zinc finger protein with TIFY domain |
Publications ? help Back to Top | |||
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