PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.W24J0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | ARF | ||||||||
Protein Properties | Length: 805aa MW: 88809.6 Da PI: 7.403 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.4 | 6.4e-24 | 164 | 265 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + +++el Aradu.W24J0 164 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGENGEL 258 99****************************963.3445679************************************************..4499999 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ Aradu.W24J0 259 RLGIRRA 265 ****996 PP | |||||||
2 | Auxin_resp | 119.7 | 2.3e-39 | 290 | 372 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 +a+a+s ks+F+v+Y+Pras+++Fvv+++k+ k++k++v++G+Rfkm+fe+++s+err+ sG+v+g+sdldp+rWp+SkWr+L Aradu.W24J0 290 VANAISAKSMFHVFYSPRASHADFVVSYQKYAKSIKNPVTIGTRFKMKFEMDESPERRCtSGIVTGMSDLDPYRWPKSKWRCL 372 689********************************************************9**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.62E-44 | 156 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-40 | 158 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.14E-23 | 162 | 264 | No hit | No description |
Pfam | PF02362 | 7.1E-22 | 164 | 265 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-24 | 164 | 266 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.042 | 164 | 266 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.8E-33 | 290 | 372 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 22.363 | 677 | 761 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 8.83E-10 | 679 | 756 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 805 aa Download sequence Send to blast |
MEIDLNHAVT EVEKNATCNG GCHKEQATAS CVCCVPSSSS SSSSTAVSSS SYLELWHACA 60 GPLTSLPKKG NVVVYFPQGH LEQAASFSPF TPLEIPTHDL QPQIFCRVVN VQLLANKEND 120 EVYTQVTLLP QAELAGMGKE LLEELGADEE GNGRTPTKTT PHMFCKTLTA SDTSTHGGFS 180 VPRRAAEDCF PPLDYKQQRP SQELIAKDLH GVEWKFRHIY RGQPRRHLLT TGWSIFVSQK 240 NLVSGDAVLF LRGENGELRL GIRRAVRPRN GLPESIVGNQ SCYPNFLSSV ANAISAKSMF 300 HVFYSPRASH ADFVVSYQKY AKSIKNPVTI GTRFKMKFEM DESPERRCTS GIVTGMSDLD 360 PYRWPKSKWR CLMVRWDEDM ETNHQDRVSP WEIDPSASLP PLSMQCSPRL KKLRTGLQAA 420 SSSHLITGGT GFMDLEESVR SPKVLQGQEN TGFMSLYFGR DTVTKQPGFE ISSPNHPNLA 480 SAGARKMTAA ELMRVHPPTY AGFVEPNNRF PRVLQGQEIC PLRSLTGKVD MNLGAWGNKP 540 SSASCTTFNL HQATRPKFDS LGSEVLQTAY FPYGDIHKAG HGSSMLCSKP SSFQRDIAPF 600 NTPLTQAGII RNEIGRSGPS IMHEQKLPEN VSAVSSLGGN SMRMPVPDEE NLKGKINGCK 660 LFGVALSGET TTQNAKRSCT KVHKQGSLVG RAIDLSRLSS YTDLFTELER LFGMEGLLRD 720 PDKGWRILYT DNENDIMVVG DDPWHEFCNV VSKIHIYTQE EVEKMTIGII SDDTQSCLEQ 780 APVNMEASKS SSVGQPDSSP TVVRV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-118 | 54 | 395 | 22 | 354 | Auxin response factor 1 |
4ldw_A | 1e-118 | 54 | 395 | 22 | 354 | Auxin response factor 1 |
4ldw_B | 1e-118 | 54 | 395 | 22 | 354 | Auxin response factor 1 |
4ldy_A | 1e-118 | 54 | 395 | 22 | 354 | Auxin response factor 1 |
4ldy_B | 1e-118 | 54 | 395 | 22 | 354 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.W24J0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015935736.1 | 0.0 | auxin response factor 4 isoform X2 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A444Y7W7 | 0.0 | A0A444Y7W7_ARAHY; Auxin response factor | ||||
STRING | XP_007150222.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5236 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |