PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.VZ497
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HB-other
Protein Properties Length: 348aa    MW: 38556.6 Da    PI: 8.4911
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.VZ497genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.96.3e-071375655
                 S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC...........TS-HHHHHHHHHHHHHHH CS
     Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl...........gLterqVkvWFqNrRake 55
                 +ft++++ e+e+  ++  n  p ++  + +A+k             ++ rqV +WFqN+R+  
  Aradu.VZ497 13 RFTSSEVAEMETILHEhnNAMPARDVLAAIAEKFsespgrckdkiTVQMRQVWNWFQNKRYAI 75
                 6999999999999986559999*********************99999************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.64E-9478IPR009057Homeodomain-like
SMARTSM003890.0013782IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-71278IPR009057Homeodomain-like
PROSITE profilePS500719.4581378IPR001356Homeobox domain
PfamPF000462.1E-41375IPR001356Homeobox domain
CDDcd000860.001681376No hitNo description
PfamPF167194.9E-40124250IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFTSSEVA EMETILHEHN NAMPARDVLA AIAEKFSESP GRCKDKITVQ  60
MRQVWNWFQN KRYAIRAKLN KSLVKLDITP MTKASSAVVK NIHQPTAATI PTASGKVTQE  120
SSATEFEAKS GRDRAWYDVA NFIMHRYLES GDPEVLVRFS GFGPAEDEWV NVRKNVRPRS  180
LPCESAECVA VLPGDLILCF QEGKEQALYF DAHVLDAQRR RHDVRGCRCR FLVRYDHDQS  240
EEIVQLRKIC RRPETDFRLQ QLHAVPEMKS GIDPAPVHAV RVTTSAESQK QQNANTPMST  300
LAQSISKVET SSDVTAGSVF PVSAATFATN VASSSVHGAS SHSMAEGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-461212541134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-461212541134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-461212541134SHH1 SAWADEE
4iur_B2e-461212541134SHH1 SAWADEE
4iut_A2e-461212541134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-461212541134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-461212541134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-461212541134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-461212541134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-461212541134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.VZ497
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015936792.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_025614978.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-125SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A445BYT60.0A0A445BYT6_ARAHY; Uncharacterized protein
STRINGXP_004511250.11e-166(Cicer arietinum)
STRINGAET030101e-166(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-114sequence-specific DNA binding transcription factors;sequence-specific DNA binding