PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.VW8XJ
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SRS
Protein Properties Length: 287aa    MW: 31308.7 Da    PI: 8.1311
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.VW8XJgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702172.62e-53902386154
       DUF702   6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssa...eskkel 100
                    C dCGn+akkdC+++RCR CCk rg+dC+thv+stWvpa krrer+ + +     +aa++++++++   +    ++++ s t+++s    +++   
  Aradu.VW8XJ  90 RVCTDCGNRAKKDCVYRRCRSCCKGRGYDCTTHVRSTWVPALKRRERHVAVTGGVGGEAANKRTKNNNGCAS---GSATSHSYTSTNSDscySHQDAR 184
                  57*********************************************8877776665555443333333332...33333333333222000223333 PP

       DUF702 101 etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                   ++slP +v+++avfrc rvs+v +ge+e+aY ++v+i+Ghvf+G+Lyd+G++ 
  Aradu.VW8XJ 185 FKESLPGHVRAPAVFRCHRVSTVGNGENEFAYLATVHISGHVFRGFLYDHGVDP 238
                  4456***********************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR016234.8E-2491133IPR006510Zinc finger, lateral root primordium type 1
PfamPF051421.2E-5191237IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016241.2E-22189236IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSMLGLTDLV FIAPNPSSLH HHRQQQLMST ENDNNNSNNN PLSVGFGIFP LLAATPCVQV  60
VQNQSNEEAM EDSGKKKKKI DEDENGSEFR VCTDCGNRAK KDCVYRRCRS CCKGRGYDCT  120
THVRSTWVPA LKRRERHVAV TGGVGGEAAN KRTKNNNGCA SGSATSHSYT STNSDSCYSH  180
QDARFKESLP GHVRAPAVFR CHRVSTVGNG ENEFAYLATV HISGHVFRGF LYDHGVDPKN  240
TIMPSYASEL QLGNNCISNG KNKECSSSAI GVTTNEYDNL YSASAAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.VW8XJ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015947078.10.0protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A445B1830.0A0A445B183_ARAHY; Uncharacterized protein
STRINGGLYMA04G17885.12e-98(Glycine max)
STRINGGLYMA11G21700.28e-98(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.21e-46Lateral root primordium (LRP) protein-related