PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.VV430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | ARF | ||||||||
Protein Properties | Length: 556aa MW: 62094.9 Da PI: 7.6291 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.4 | 2.8e-23 | 124 | 225 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g+ W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF + +++ Aradu.VV430 124 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TIIAKDVHGQCWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLRA--QNGD 217 89****************************986445444..8************************************************43..6777 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+v+++r+ Aradu.VV430 218 LCVGIRRA 225 8****996 PP | |||||||
2 | Auxin_resp | 109 | 5e-36 | 249 | 332 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a++ a ++ +FevvY+Pr s++eF+vk+++v+++++++++ GmRfkm fetedss++++ +Gt+++v+ +dp++Wp+S+Wr+L+ Aradu.VV430 249 AVNCAVNGRPFEVVYYPRGSSPEFCVKASSVRASMQIQWCSGMRFKMPFETEDSSRISWfMGTISSVQLSDPLHWPHSPWRLLQ 332 57788999**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.59E-30 | 110 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.7E-38 | 119 | 234 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.56E-22 | 123 | 224 | No hit | No description |
SMART | SM01019 | 2.5E-21 | 124 | 226 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-21 | 124 | 225 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.929 | 124 | 226 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.7E-31 | 249 | 332 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 556 aa Download sequence Send to blast |
MDRTRTPIQT CLDSQLWHAC AGPMVQMPPL NTKVLYFPQG HAEHQQAHAH GRKPHFAPAM 60 KTPIPPFFPC TLTAIKYMAE PETDEVYVKI TLTPLLSDPE EHDHHCSSNH NSFLDNNGEK 120 PASFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYSAEPP VQTIIAKDVH GQCWKFRHIY 180 RGTPRRHLLT TGWSNFVNHK KLVAGDSIVF LRAQNGDLCV GIRRAKKGGI AAGTATNTNI 240 TTNNNVGEAV NCAVNGRPFE VVYYPRGSSP EFCVKASSVR ASMQIQWCSG MRFKMPFETE 300 DSSRISWFMG TISSVQLSDP LHWPHSPWRL LQVVWDEPDL LQNVKCVNPW LVELVSNVPN 360 FHLSPFSPPR KKQRFLQDQP DFQLINQIPI PSSFSTIQDL QGIQGARHAH QFGLAPQDFH 420 ILDGFPRLDH AAQQPHRPSF GIYNKNNSAT TKNNNNLEIS CLLSVGNPGQ SFIKEESCSN 480 ETKAPHILLF GKLIHTDQQN HSSNSSNSVY EGTNSSLKTS TENSSDDDGG SPWFKNQHKN 540 NDLVGTENIN ILCMAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 5e-78 | 4 | 353 | 46 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.VV430 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015942629.1 | 0.0 | auxin response factor 16 | ||||
Swissprot | Q93YR9 | 0.0 | ARFP_ARATH; Auxin response factor 16 | ||||
TrEMBL | A0A445BCX1 | 0.0 | A0A445BCX1_ARAHY; Auxin response factor | ||||
STRING | GLYMA10G35481.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF637 | 34 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 1e-174 | auxin response factor 16 |