PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.VU2RD | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 286aa MW: 31946.1 Da PI: 4.3365 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3.1e-17 | 21 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e +++++k +G++ W++Ia++++ gRt++++k+ w+++l Aradu.VU2RD 21 RGNFTAEEEETIIKLHKAMGNK-WSKIASRLP-GRTDNEIKNVWNTHL 66 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.368 | 1 | 15 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-11 | 2 | 28 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.84E-22 | 2 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.698 | 16 | 70 | IPR017930 | Myb domain |
SMART | SM00717 | 6.8E-16 | 20 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 21 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.89E-12 | 23 | 66 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 29 | 67 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MRCGKSCRLR WINYLRPDVK RGNFTAEEEE TIIKLHKAMG NKWSKIASRL PGRTDNEIKN 60 VWNTHLKKRL TAAKSSDSRE DNANDGSKIE SSVTSPSSSS SESFFSNETP KTNNNNPCNE 120 TNDHISQTDD DDQDSGGKLL QEVIDQQQLV SPTFLNCVAP YDIDVTLEEV DKPNNNNLET 180 KEDCDFWKML DNIESFLSSN EASPPPPPPH QSQTSPTNLN ELGGVVGEAT TKGSNNKAQQ 240 EIIMDPSNDV FDLDLVTRPP EPDQLESELD LGYIQLWPSL PPNTIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-19 | 2 | 70 | 40 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.VU2RD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015932323.2 | 1e-166 | transcription factor MYB58-like | ||||
TrEMBL | A0A445CH25 | 1e-163 | A0A445CH25_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA08G17861.1 | 2e-57 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10029 | 30 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16490.1 | 1e-42 | myb domain protein 58 |