PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.V9D7S
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CO-like
Protein Properties Length: 365aa    MW: 39720.5 Da    PI: 6.9885
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.V9D7SgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.41.1e-061554437
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                 + C+ ++   + lfC+ ++ +lC  C +++H        H
  Aradu.V9D7S 15 KPCDSCKIASAALFCRPDSAFLCIACDSKIHCAnklasrH 54
                 68******99********************9554555556 PP
2zf-B_box27.28.1e-0956102242
     zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                  + ++C+ +e+ ++   C+ +   lC +C + +H+       H+++p+
  Aradu.V9D7S  56 RVWMCEVCEQAPAAVTCKADAAALCVTCDSDIHSAnplarrHERIPV 102
                  5789*****************************66889999999885 PP
3CCT69.77.2e-24290333144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Aradu.V9D7S 290 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 333
                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.3E-91259IPR000315B-box-type zinc finger
PROSITE profilePS501199.9261259IPR000315B-box-type zinc finger
CDDcd000212.86E-61659No hitNo description
PROSITE profilePS5011910.75155102IPR000315B-box-type zinc finger
PfamPF006436.8E-757102IPR000315B-box-type zinc finger
CDDcd000212.10E-758102No hitNo description
SMARTSM003364.5E-1060102IPR000315B-box-type zinc finger
PfamPF062035.6E-18290332IPR010402CCT domain
PROSITE profilePS5101716.787290332IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGLKGLRSGW TVPPKPCDSC KIASAALFCR PDSAFLCIAC DSKIHCANKL ASRHDRVWMC  60
EVCEQAPAAV TCKADAAALC VTCDSDIHSA NPLARRHERI PVEPFFDSAD SIVKASAASF  120
SFVVPTDNGI SSDGFPNDDA AWLIPNPNYG SKLMDAPDMK SREMFFSEMD PFLDFDYSNS  180
FQNNNNNNNN SAGNDSVVPV QSKPAPMMNH HAEGSCFDID FCRSKLSSFN YPSQSISQSV  240
SSSSLDVGVV PDGNTVSDIS YSFGRNCSDS SGMGSAGSGG GGTQLCGMDR EARVLRYREK  300
RKNRKFEKTI RYASRKAYAE TRPRIKGRFA KRTEIESEVD RLYSPGGGVP GCLMLDNQYG  360
VVPSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.V9D7S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU3233190.0GU323319.1 Arachis hypogaea cultivar Huayu19 CCT domain protein (CCT) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015933606.10.0zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH81e-119COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A445AV410.0A0A445AV41_ARAHY; Uncharacterized protein
TrEMBLA0A445ENC70.0A0A445ENC7_ARAHY; Uncharacterized protein
STRINGXP_007154800.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-115CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]