PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.V8SZB
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 398aa    MW: 45065.6 Da    PI: 9.4278
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.V8SZBgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.94.3e-14304396397
                  EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  k l +s+   ++ +++p +fae+   + +++  +++   +g  +++ l+++kk+++  +lt+GWk F+k ng k g ++ F++ +++e++++vk++
  Aradu.V8SZB 304 KLL-TSNQVDNSSVIIPLRFAESAFPSRHNH--VKVILDNGSCYRMGLRWSKKKKAgLYLTRGWKLFAKYNGFKFGTVLQFSVFSNEETTMHVKIL 396
                  555.555555566********9996454455..555556699999999995555555*************************9999********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-628103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-13299395IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.166301398IPR003340B3 DNA binding domain
SMARTSM010191.8E-4302398IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-12302396IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-11304396IPR003340B3 DNA binding domain
CDDcd100176.11E-10305397No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEESRLIPAD FDDDRIFYLH VDPEAVTHEL PSLFYRKYRE LLRDRMIVID MNDNQIELSL  60
SRGFSTGYIL HGFHNLVRCY GLGHGGWLKL LYVGEDIFVV MKVKDSFMMQ KEFSYPTSNL  120
LHKNKPPANH LSAQQMPSVS TPSDLVHSNY ADMPVLEVNL QNSFVQETLH NPITTIPSPA  180
STGNTFKLKI VYKQDLQLTG FQGQDGFLSA FLLSKSFFKK DSNHSAASTS HTMPNKCKPF  240
CQDPTQVSQQ VSPYCNGTTN HVSSITKLQT HLTGKVEPNQ YATPLTTGGP NSNIQGPHVY  300
RCLKLLTSNQ VDNSSVIIPL RFAESAFPSR HNHVKVILDN GSCYRMGLRW SKKKKAGLYL  360
TRGWKLFAKY NGFKFGTVLQ FSVFSNEETT MHVKILKI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.V8SZB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020981127.10.0uncharacterized protein LOC107495480
TrEMBLA0A445D3590.0A0A445D359_ARAHY; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-06B3 family protein