PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.V7UXH
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 509aa    MW: 58683.3 Da    PI: 9.4688
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.V7UXHgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.47.6e-2680168289
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                  fYn+Y++  GF  r+ k+ ++ + gei+++tfvC+++g+re++  +  +++r+++a+tr+gC a++++k+++ +g+w+v+++++eHnHel
  Aradu.V7UXH  80 FYNNYSRLKGFASRRGKTVRN-TAGEIVRYTFVCNRQGFREKKWLEkVDRKREHKAVTRCGCLAEMRIKRKEgSGRWYVSRFVEEHNHEL 168
                  9****************9998.8888***************99766467888999*********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-2380168IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.78310343IPR007527Zinc finger, SWIM-type
SMARTSM005750.005318345IPR006564Zinc finger, PMZ-type
SuperFamilySSF577561.76E-6447485IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.103.0E-4463483IPR001878Zinc finger, CCHC-type
PROSITE profilePS501589.092466483IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MHGYAIFKQN ALHIMAAGSI MFVLLFEDTM YDTRVEEDAE SSDWEGRGAS MLPVFLGLNG  60
LRAEDVLEME FSSPQEASGF YNNYSRLKGF ASRRGKTVRN TAGEIVRYTF VCNRQGFREK  120
KWLEKVDRKR EHKAVTRCGC LAEMRIKRKE GSGRWYVSRF VEEHNHELGY GKLVDYLRSH  180
RKISEVEVAQ LTSMRELGIS IPKIYESFAA QLGGFNLVTF TKQDMCVDFL RDTEDELDFR  240
SWYGTPVLQT EFVELEKSGW TMFTREMFLR YRDSLKRCVR VRICEFDDSD NPHAYTLQKY  300
QRPEMNWKVY RDHISNRFSC SCMRMESFGI PCVHILSVCV RLDLVEIPES LVLRRWSKAA  360
KLEIHNHCVE QHTADPSVTY RTRLGAFSQL CKRLGRVACM SDEDFKLYSN KLMSDALFLE  420
IKYGLRPLTD NMTTANDCGV KDPIRVRTKG TARMSQAGGS APKTKRKCSA CGKLGHRRTK  480
CPNGGAQPSP RNKQSLAGRN KRKRTEVTT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272277DSLKRC
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.V7UXH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015963887.20.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444WTC80.0A0A444WTC8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11042217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-22FAR1-related sequence 5