PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.V7DVH
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 282aa    MW: 31299.9 Da    PI: 7.0064
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.V7DVHgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.21.7e-1486132354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Aradu.V7DVH  86 KSHSEAERRRRERINNHLSKLRSLLPST-----TKTDKASLLAEVIQHVKEL 132
                  79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.00383132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-1286132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-1587142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-1587141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-1389138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.05E-596135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MPSIQELPFN NHESFIVPPQ QQQQQASPYA SFFNSRRVHP SSSSSMQFAA AYHHHEGATS  60
SFDLQAELSK MTAQEIMEAK ALAASKSHSE AERRRRERIN NHLSKLRSLL PSTTKTDKAS  120
LLAEVIQHVK ELKRQTSMIA ETSSVPTESD ELTVDDASDE DGKLVIKASL CCEDRSDLLP  180
ELIKTLKSMK LRTLKADITT LGGRVKNVLF ITAEQDYYSS STGNEDHHHQ HDHNNSYQYC  240
ISSIQEALKA VMEKSNGGVG NEPGSSSASV KRQRTNIISS IS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19196ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.V7DVH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015942739.10.0transcription factor bHLH30
SwissprotQ9S7Y12e-91BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A445BCJ81e-179A0A445BCJ8_ARAHY; Uncharacterized protein
STRINGXP_004297146.11e-111(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-84bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]