PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.V78GZ

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

CAMTA

Protein Properties

Length: 1072aa MW: 120536 Da PI: 5.6481

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.V78GZ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	163.9	2.9e-51	75	175	4	104
CG-1 4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 ++rwl++ ei++iL n++ +++t+e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++fqrr+yw+ Aradu.V78GZ 75 AQHRWLRPAEICEILRNYRMFQITSEPHNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWM 172 49************************************************************************************************ PP CG-1 102 Lee 104 Le Aradu.V78GZ 173 LEP 175 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	70.788	68	199	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	5.5E-67	71	406	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.2E-44	74	175	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.7E-7	499	588	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	7.98E-17	502	588	IPR014756	Immunoglobulin E-set
Pfam	PF01833	7.7E-7	502	581	IPR002909	IPT domain
Gene3D	G3DSA:1.25.40.20	3.8E-17	678	796	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.6E-6	683	761	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	4.97E-17	692	794	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.32E-13	696	794	No hit	No description
PROSITE profile	PS50297	17.926	697	794	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	3200	702	731	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	8.603	702	734	IPR002110	Ankyrin repeat
SMART	SM00248	0.0047	735	764	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	10.125	735	767	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	8.096	884	913	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0026	886	904	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1072 aa Download sequence Send to blast
MAERPSFGLG PRLVTENGFR YLDLRLGRGF EKAELKFIRG GEASLIAFRQ LYIAMNDMEF 60 DRCWFNDFQQ LQFEAQHRWL RPAEICEILR NYRMFQITSE PHNRPPSGSL FLFDRKVLRY 120 FRKDGHNWRK KKDGKTVKEA HEKLKVGSVD VLHCYYAHGE ENENFQRRSY WMLEPFCTGN 180 KTNTGGNIDS YDVSSDSQRT PSPSSGLPTN YSNLPSLSTD SMSPASSLAS LREDADSGDR 240 GQSSISGDYI PVVPGERFGG SDTTYIDGQK AHSMASWDTV LKQCNAELQS DPSFVPFSSI 300 PSSLIGNTVE QERNDFGDLL GSKSSLTEEA GSSQSIQSNW QIPFEESSGR LPNFTQSLSL 360 EFGSDYISGL VGNETLNASS EIDPHLFNFH GEPKEQHVQQ HYPERHADGQ SQYALQSNSL 420 NKVLGEESLN HAFTAKRTLL DGDESLKKVD SFSRWITKTL GEVDDLNMQS SAGISWGTDE 480 SGHVIDDSSL SPSLSQDQLF SINEFSPKWA YAEVETEVVI VGSFLKYQPE VSTSNWSCMF 540 GEVEVPAEVL TNGILCCQAP PHKVGRVPFY VTCSNRLACS EVREFDYREG FSGNVEFADF 600 YNDSTERLLH LRLEEFLSSK PVCPSKQTFE NDMEKRDVIL KLIFLREEEE FSSKEEQHVE 660 SDTSSQKVKA HLFHRQIKEK LYSWLLHKVT ESDKGPNVLD KDGQGVLHLA AALGYDWAIQ 720 PILTAGGGIN FRDVNGWTAL HWAASCGRER TVVVLVTMGA NSGALTDPSP AFPTGRTASE 780 LASTNGHKGI SGFLGESLLT SHLESLTMDD QYKGGRQEIS VTKVVQTVSE RTATPVLYGD 840 DMPDDPCLKD SLTAVINATQ AADRIHQNAV FSEEAKSGQG DRLANAAATQ IQKKFRGWKK 900 RKEFLIIRQR IVKIQGKLHR PSLRSDWAHV RGHQVRKSLK SIIWSVGILE KVILRWRRKG 960 SGLRGFKPDA LNKAPIQQSD PPKEDDYDFL KEGRKQSEEK FQKALSRVKS MVQYPEARAQ 1020 YRRLLNVVDD FRQTKACNMD LVNSEETVDG VEDLIDIDML LDDDNFIPIA FD

Sequence ? help Back to Top

Protein Sequence Length: 1072 aa Download sequence Send to blast

MAERPSFGLG PRLVTENGFR YLDLRLGRGF EKAELKFIRG GEASLIAFRQ LYIAMNDMEF  60
DRCWFNDFQQ LQFEAQHRWL RPAEICEILR NYRMFQITSE PHNRPPSGSL FLFDRKVLRY  120
FRKDGHNWRK KKDGKTVKEA HEKLKVGSVD VLHCYYAHGE ENENFQRRSY WMLEPFCTGN  180
KTNTGGNIDS YDVSSDSQRT PSPSSGLPTN YSNLPSLSTD SMSPASSLAS LREDADSGDR  240
GQSSISGDYI PVVPGERFGG SDTTYIDGQK AHSMASWDTV LKQCNAELQS DPSFVPFSSI  300
PSSLIGNTVE QERNDFGDLL GSKSSLTEEA GSSQSIQSNW QIPFEESSGR LPNFTQSLSL  360
EFGSDYISGL VGNETLNASS EIDPHLFNFH GEPKEQHVQQ HYPERHADGQ SQYALQSNSL  420
NKVLGEESLN HAFTAKRTLL DGDESLKKVD SFSRWITKTL GEVDDLNMQS SAGISWGTDE  480
SGHVIDDSSL SPSLSQDQLF SINEFSPKWA YAEVETEVVI VGSFLKYQPE VSTSNWSCMF  540
GEVEVPAEVL TNGILCCQAP PHKVGRVPFY VTCSNRLACS EVREFDYREG FSGNVEFADF  600
YNDSTERLLH LRLEEFLSSK PVCPSKQTFE NDMEKRDVIL KLIFLREEEE FSSKEEQHVE  660
SDTSSQKVKA HLFHRQIKEK LYSWLLHKVT ESDKGPNVLD KDGQGVLHLA AALGYDWAIQ  720
PILTAGGGIN FRDVNGWTAL HWAASCGRER TVVVLVTMGA NSGALTDPSP AFPTGRTASE  780
LASTNGHKGI SGFLGESLLT SHLESLTMDD QYKGGRQEIS VTKVVQTVSE RTATPVLYGD  840
DMPDDPCLKD SLTAVINATQ AADRIHQNAV FSEEAKSGQG DRLANAAATQ IQKKFRGWKK  900
RKEFLIIRQR IVKIQGKLHR PSLRSDWAHV RGHQVRKSLK SIIWSVGILE KVILRWRRKG  960
SGLRGFKPDA LNKAPIQQSD PPKEDDYDFL KEGRKQSEEK FQKALSRVKS MVQYPEARAQ  1020
YRRLLNVVDD FRQTKACNMD LVNSEETVDG VEDLIDIDML LDDDNFIPIA FD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.V78GZ

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	6e-44	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025622324.1	0.0	calmodulin-binding transcription activator 2
Swissprot	Q6NPP4	0.0	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A445BAH1	0.0	A0A445BAH1_ARAHY; Uncharacterized protein
STRING	AES63449	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7406	26	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]