PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.V00LD
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 290aa    MW: 33114.9 Da    PI: 9.7493
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.V00LDgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.45.8e-2322111197
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ffk+l+ps  l  + +++p+kf++e+g  ++ s +++l+ ++g +Wev+l  +k++gr++l++GWkeFv+ + L+ gD +vF++dg+s f  +v ++
  Aradu.V00LD  22 FFKILLPSTILDGK-IMIPRKFVREYG--ERLSNKVVLKLPNGTEWEVYL--EKHDGRIWLQNGWKEFVEYHSLRFGDLLVFRFDGTSHF--NVFIC 111
                  89***999999887.***********9..45999****************..*********************************99999..66666 PP
2B345.11.9e-14191285399
                  EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE CS
           B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvf 97 
                  +v+++++ ++ + ++lp+  ++++ ++  +++t+tl     rs +v+liy +k+s +  lt+GW +F+++ +L++gD + F+l  ++ ++  ++v++f
  Aradu.V00LD 191 TVMIKPNRGSCC-MWLPRGSLKDYIKP--GKQTVTLLV-GERSSKVRLIYyEKHSTG-CLTAGWTRFARESDLEVGDACSFELLaNHsEDIVMKVSIF 283
                  567666666655.********999433..445777666.557777777773666666.69**********************7734446666777777 PP

                  -S CS
           B3  98 rk 99 
                  ++
  Aradu.V00LD 284 KH 285
                  65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-2816114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-2717113IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-2321112No hitNo description
PROSITE profilePS5086315.73521114IPR003340B3 DNA binding domain
SMARTSM010191.6E-2322114IPR003340B3 DNA binding domain
PfamPF023628.9E-2022111IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-17186286IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-15186285IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.1E-8189286IPR003340B3 DNA binding domain
PfamPF023629.4E-13190285IPR003340B3 DNA binding domain
CDDcd100176.06E-13190284No hitNo description
PROSITE profilePS508639.023245286IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MASKLYKDAS NGDEATTKPV HFFKILLPST ILDGKIMIPR KFVREYGERL SNKVVLKLPN  60
GTEWEVYLEK HDGRIWLQNG WKEFVEYHSL RFGDLLVFRF DGTSHFNVFI CDMSATEIDY  120
PFKNKYGKRA NTSDEELLPR KTKRTNANNK DGGKLKNPRE GKMSNDLLSK TKPSGFGKFE  180
TTEVAKNTSF TVMIKPNRGS CCMWLPRGSL KDYIKPGKQT VTLLVGERSS KVRLIYYEKH  240
STGCLTAGWT RFARESDLEV GDACSFELLA NHSEDIVMKV SIFKHSTTEP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.V00LD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015971483.10.0B3 domain-containing transcription factor VRN1-like
RefseqXP_025703979.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A444YTG60.0A0A444YTG6_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-26B3 family protein