PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.UJ9WA
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 28356.1 Da    PI: 7.7478
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.UJ9WAgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF1008.9e-32959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss
  Aradu.UJ9WA  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSS 59
                 79***********************************************96 PP
2K-box90.52.9e-30841721199
        K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                   +++++ ++++++Lk+++e Lqr+qR+llGedL +++  eL qLe+qLe +lk+iRs+K++++l+q+ +lq++e +l e+n+ Lr+k++
  Aradu.UJ9WA  84 ISDTQTNYEDYKRLKDNVEALQRSQRNLLGEDLAQMNTTELDQLENQLEVALKNIRSTKTQFMLDQLTDLQNREMALVETNNVLRSKMK 172
                  4678999*******************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.992161IPR002100Transcription factor, MADS-box
SMARTSM004324.2E-42160IPR002100Transcription factor, MADS-box
CDDcd002651.11E-44278No hitNo description
SuperFamilySSF554551.01E-33277IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-333859IPR002100Transcription factor, MADS-box
PfamPF014862.9E-2686171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.80487177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFSST  60
SSMMRTLEKY HKYSYSALES GRPISDTQTN YEDYKRLKDN VEALQRSQRN LLGEDLAQMN  120
TTELDQLENQ LEVALKNIRS TKTQFMLDQL TDLQNREMAL VETNNVLRSK MKQLEELNNH  180
SSEVALEDVG PTIHYNRFPS QSDHPFFQPV LGVNSNLQIG YNQSIHHDVN VGASSLTMQG  240
FVSGWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A9e-238917119101Developmental protein SEPALLATA 3
4ox0_B9e-238917119101Developmental protein SEPALLATA 3
4ox0_C9e-238917119101Developmental protein SEPALLATA 3
4ox0_D9e-238917119101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with EJ2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.UJ9WA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020984163.10.0MADS-box protein CMB1-like isoform X1
SwissprotK4DEK07e-98J2_SOLLC; MADS-box protein J2
TrEMBLA0A445AZ521e-173A0A445AZ52_ARAHY; Uncharacterized protein
TrEMBLA0A445AZ941e-171A0A445AZ94_ARAHY; Uncharacterized protein
STRINGGLYMA17G08861.11e-129(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.11e-83MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]