PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.UDX1X
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 288aa    MW: 33686.6 Da    PI: 10.2922
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.UDX1XgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.16.3e-132751998
                 -HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                 p+kf +++gg+ +++  ++l+ ++g +W++    ++++g+++++kGWkeF+    L+ g ++ F+++g+s+   +v +f+
  Aradu.UDX1X  2 PNKFRRKYGGDMPNP--VKLQPPDGTEWRIDW--TNRDGEILFEKGWKEFATFYTLENGHVLWFEYNGTSNI--KVNIFD 75
                 99******9998776..***************..*******************************9986555..888886 PP
2B346.18.6e-152082861799
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   lp  f++ + ++++   +  +     ++W  +liy  +++  +++ +W+ Fvk+n+Lk+gD+++F+l++r++ el+v+++r+
  Aradu.UDX1X 208 NLPVCFFRMYFENTK---QYAILRVGKKQWHATLIYYPNRKNALIS-NWRLFVKENNLKAGDVCIFELINRQDPELKVHIRRS 286
                  577778877765533...356667788*********9998777666.***********************99999*****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.267177IPR003340B3 DNA binding domain
SuperFamilySSF1019361.31E-15184IPR015300DNA-binding pseudobarrel domain
CDDcd100175.48E-8175No hitNo description
PfamPF023622.3E-10275IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-15277IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.096277IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-20185286IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-18186286IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.3E-9193287IPR003340B3 DNA binding domain
PfamPF023629.7E-13209286IPR003340B3 DNA binding domain
CDDcd100175.94E-13209285No hitNo description
PROSITE profilePS5086310.912232287IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MPNKFRRKYG GDMPNPVKLQ PPDGTEWRID WTNRDGEILF EKGWKEFATF YTLENGHVLW  60
FEYNGTSNIK VNIFDMTALE IDYPSNGRIG DDNSVEILDE PPPRRDRGRP KKKVIAEPKQ  120
SRASTSKKMK SAIKTKDKDK NPNTQNLKLH VENEKDGQSE ETADLKLPII QRARPDMDVI  180
REAKKFKSKN PSFVIKIKQK HQTGSPANLP VCFFRMYFEN TKQYAILRVG KKQWHATLIY  240
YPNRKNALIS NWRLFVKENN LKAGDVCIFE LINRQDPELK VHIRRSHD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.UDX1X
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015946665.20.0B3 domain-containing protein At4g01580-like isoform X1
TrEMBLA0A445B0X90.0A0A445B0X9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-27B3 family protein