PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.UC2H2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 139aa MW: 15860 Da PI: 5.7006 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 35.6 | 3.1e-11 | 64 | 138 | 1 | 79 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevt 79 kfY++YA +GFs+r+++ +++ +ei+++ +Cs e k +++ + +++ +++ +C a++ ++ k g w ++ Aradu.UC2H2 64 KFYRNYAMAAGFSTRVHRINRK--GNEIKNQLITCSSEEKWKSKISP---TEKMNPTAGLNCPARIYIHSLKeVGAWIIS 138 6***************998887..8889**********999998776...8899999***********988879999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.0E-8 | 64 | 138 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MDDSTSDCQV NQREVDYEFE SNEVPELLSV LDDQFLAILP LSVVDDHFVP KVRMTFTTLE 60 DAGKFYRNYA MAAGFSTRVH RINRKGNEIK NQLITCSSEE KWKSKISPTE KMNPTAGLNC 120 PARIYIHSLK EVGAWIISK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.UC2H2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ637178 | 1e-112 | HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020992539.1 | 7e-68 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_020997160.1 | 2e-68 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_020997362.1 | 8e-68 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A444YPX9 | 3e-74 | A0A444YPX9_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A444ZDI5 | 2e-72 | A0A444ZDI5_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21 | 14 | 477 |