PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.TQU2T | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 317aa MW: 35415.2 Da PI: 10.2417 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.5 | 9.9e-13 | 265 | 310 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k s a++L +Av YIk+Lq Aradu.TQU2T 265 SIAERVRRTRISERMKKLQELVPNM----DKQASTADMLDMAVGYIKDLQ 310 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.913 | 259 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.27E-14 | 262 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.06E-11 | 263 | 312 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.5E-13 | 264 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-11 | 265 | 315 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.7E-10 | 265 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MDSSSRYHQQ QLNSSSSSAS GLLRFRSAPP SVLEQLQVVE GSCSSEQERS SSSSFLRFFS 60 SNKNKPSSTT KPPSLSLMNS NHRFTRLHNS STAPSASTSS GTDLPRQSTF PASHFSFHDN 120 NGYDTNANTM TKGVGNYSGS DELSLSTMNR FNNQISFSSS RSPSSSATAT NSNRNGGLFF 180 PNYGSWNETS YKRDDRNRIH KLIFDANQNE EFGNNKVVDT LSHQLSFPKA EPEMFAMENM 240 IHFPLSDSVP CKIRAKRGCA THPRSIAERV RRTRISERMK KLQELVPNMD KQASTADMLD 300 MAVGYIKDLQ KQFKVRN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.TQU2T |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015969471.1 | 0.0 | transcription factor bHLH130-like isoform X1 | ||||
Refseq | XP_025604460.1 | 0.0 | transcription factor bHLH130 | ||||
TrEMBL | A0A445CLE7 | 0.0 | A0A445CLE7_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA03G29750.6 | 9e-70 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF23906 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 1e-45 | bHLH family protein |