PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.TED1R
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Nin-like
Protein Properties Length: 718aa    MW: 79574.8 Da    PI: 5.2133
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.TED1RgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK95.24.6e-30418469152
       RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  aek+isl++l++yFs+++kdAAk+Lgvc+T+LK+iCRq+GI+RWP+Rki+++
  Aradu.TED1R 418 AEKNISLSVLQQYFSGSLKDAAKSLGVCPTTLKKICRQHGISRWPSRKINKV 469
                  589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.063401489IPR003035RWP-RK domain
PfamPF020424.7E-27421469IPR003035RWP-RK domain
SuperFamilySSF542772.75E-19621706No hitNo description
Gene3DG3DSA:3.10.20.2406.4E-21622704No hitNo description
SMARTSM006661.5E-17625707IPR000270PB1 domain
PROSITE profilePS5174516.224625707IPR000270PB1 domain
PfamPF005646.7E-15627704IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MEDQFFSEGE GIGYWTPPGA QFDGPSMIDN GIKNLVSEEM LDNLPDLMNF DNLAGWVEQD  60
NDPYFMTKDC GNYNATETSL GFDEKAVLQQ LETQLGLSED ANDINNINGS LQELSAADMG  120
NCLVPRPFAW SLDERMLRAM DLFKESVGDG ILTQLVNLRT TTPPRLMSQC LSNNKRAALT  180
EIIDVLRALC HAYSLPLALT WIPCCYTEGV GDEASRIRIK DGGRIPGEKT VLCIEESACY  240
INDIVVGGFV HACVEHYLEE GQGVAGKALQ SNRPFFYSDV KAYNISAYPL VHHARKYKLN  300
AAVAVRLRSI HTNDDDYIIE FFLPVNMNGS EEQQLLLNNL SDTMQRMCQS LRTVSDAELY  360
GIEGSQVQFS KEEGSHMAPD GDHDSVMPMS LTNNETEAAH NQAMDGSRKQ IEKKKSPAEK  420
NISLSVLQQY FSGSLKDAAK SLGVCPTTLK KICRQHGISR WPSRKINKVN RSLKKIQTVL  480
DSVKGVEGGL KFDPYKGGFM SGGSSNQEIN AHKSSLFRKK CSVKYPDPAA GSKDSKPIAM  540
DDGGLRQEPF PVSILESSWC DIAYHSPNTL VADEMADKLG EHHNPTTSSM SDSSNGFGSI  600
LRGSRKFENR KHLKAKSPCV DNGSKLVVKA AYGEDRIRFK FDPAAGCLQL YEEVATRFKL  660
QIGSFQLKYL DDDEEWVRMV NDSDLKECME ILDDHGTRAV KFLVLDIPSG LSSRGSNT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.TED1R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020989035.10.0LOW QUALITY PROTEIN: protein NLP2
SwissprotO228641e-163NLP8_ARATH; Protein NLP8
TrEMBLA0A445BBC90.0A0A445BBC9_ARAHY; Uncharacterized protein
STRINGGLYMA12G05390.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34643465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43500.21e-162Nin-like family protein
Publications ? help Back to Top
  1. Yan D, et al.
    NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 13179
    [PMID:27731416]