PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.TB6GC | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 216aa MW: 25568.8 Da PI: 10.0729 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.3 | 5.5e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ien +nrqvt+skRrngi+KKA+ELSvLCda+v++i+fs+++k++ey+s Aradu.TB6GC 9 KLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYIS 59 569**********************************************86 PP | |||||||
2 | K-box | 65.9 | 1.4e-22 | 76 | 170 | 6 | 96 |
K-box 6 gks.leeakaeslqqelakLkkeienLqreqRhllGe...dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 g l+++++e++ ++l+kLk+ +++L+r++R+++Ge d++++s+++L+ Le+++ +++ kiR++K +++++ +e+ +kk ++l++ n +L Aradu.TB6GC 76 GDIdLWHSHYEKMLENLKKLKDINNKLRRQIRNRIGEgslDMDDMSFQQLRTLEEDMVSAIAKIRERKFHVIRTRTETCRKKVRSLEQMNGNLLL 170 43359********************************77779************************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.497 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.8E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.29E-38 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 2.09E-35 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-25 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.6E-17 | 82 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.3 | 85 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MGRGKIEIKL IENPTNRQVT YSKRRNGIFK KAHELSVLCD AKVSLIMFSK NNKMHEYISP 60 GLSTKKIIDQ YQKTLGDIDL WHSHYEKMLE NLKKLKDINN KLRRQIRNRI GEGSLDMDDM 120 SFQQLRTLEE DMVSAIAKIR ERKFHVIRTR TETCRKKVRS LEQMNGNLLL ELVRTLFNLM 180 LFMLLLWDEY TNTTKKEKCV IHPQFILHDE GEQESA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-15 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6byy_B | 2e-15 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6byy_C | 2e-15 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6byy_D | 2e-15 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6bz1_A | 2e-15 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6bz1_B | 2e-15 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6bz1_C | 2e-15 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6bz1_D | 2e-15 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.TB6GC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020997845.1 | 1e-139 | floral homeotic protein DEFICIENS isoform X1 | ||||
Swissprot | Q003J2 | 2e-81 | TM6_VITVI; Agamous-like MADS-box protein TM6 | ||||
TrEMBL | A0A444Z9C5 | 1e-134 | A0A444Z9C5_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA01G37470.1 | 1e-124 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2735 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 7e-57 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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