PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.T11VW
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 323aa    MW: 37569.3 Da    PI: 10.3805
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.T11VWgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.81.1e-1420109298
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  fk+ ++  +l  g l +p kf ++hg++ +++  + l+ ++g +W++    ++ +++++++kGWkeF+    L+ g  + Fk++g+s+   +v +f+
  Aradu.T11VW  20 FKIILR-KSLDDGYLKIPTKFSRKHGNNMPNP--VYLKPPDGTQWKIDW--TNDGDEILFQKGWKEFATFYTLDNGHLLWFKYNGTSNI--KVNIFD 109
                  555544.4455667***********9997776..***************..*******************************9986555..888886 PP

2B3452e-142423211699
                  EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   +lp  f++ + +++++s tl       ++W  +liy  ++++ +++ +W+ Fvk+n++k+gD+++F+l++r++ el+v+++r+
  Aradu.T11VW 242 ASLPVCFFRMYFENTKQSATLH---VGKKQWHATLIYYPYKKSAIIS-NWRLFVKENNIKAGDVCIFELINRQDPELKVHIRRS 321
                  5899999999977777765555...566*********9999998887.***********************99999*****996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.53418111IPR003340B3 DNA binding domain
CDDcd100172.85E-1018109No hitNo description
SuperFamilySSF1019365.3E-1918118IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.6E-1119111IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-1919111IPR015300DNA-binding pseudobarrel domain
PfamPF023627.5E-1220109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.7E-19220321IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-16221321IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.8E-7228322IPR003340B3 DNA binding domain
PfamPF023629.4E-12242321IPR003340B3 DNA binding domain
CDDcd100178.18E-12243320No hitNo description
PROSITE profilePS5086310.264267322IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MASSSFQKNK HPLFTVIRFF KIILRKSLDD GYLKIPTKFS RKHGNNMPNP VYLKPPDGTQ  60
WKIDWTNDGD EILFQKGWKE FATFYTLDNG HLLWFKYNGT SNIKVNIFDM SGLEIEYTSN  120
GRIDDNLVEA LEEPPPRRGR GRPKKKVIAE PKQSCPSTSK KMKRAIKTKD MDKSPNTQNL  180
KQHVKVKIEE DSQSEETADI KQPIVQCARP DIDVIREARK FKSKNPSFVI KIRQKHQAGS  240
PASLPVCFFR MYFENTKQSA TLHVGKKQWH ATLIYYPYKK SAIISNWRLF VKENNIKAGD  300
VCIFELINRQ DPELKVHIRR SHD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.T11VW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015947092.10.0B3 domain-containing transcription factor VRN1
TrEMBLA0A444XAP90.0A0A444XAP9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-30B3 family protein