PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.T11VW | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 323aa MW: 37569.3 Da PI: 10.3805 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.8 | 1.1e-14 | 20 | 109 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 fk+ ++ +l g l +p kf ++hg++ +++ + l+ ++g +W++ ++ +++++++kGWkeF+ L+ g + Fk++g+s+ +v +f+ Aradu.T11VW 20 FKIILR-KSLDDGYLKIPTKFSRKHGNNMPNP--VYLKPPDGTQWKIDW--TNDGDEILFQKGWKEFATFYTLDNGHLLWFKYNGTSNI--KVNIFD 109 555544.4455667***********9997776..***************..*******************************9986555..888886 PP | |||||||
2 | B3 | 45 | 2e-14 | 242 | 321 | 16 | 99 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +lp f++ + +++++s tl ++W +liy ++++ +++ +W+ Fvk+n++k+gD+++F+l++r++ el+v+++r+ Aradu.T11VW 242 ASLPVCFFRMYFENTKQSATLH---VGKKQWHATLIYYPYKKSAIIS-NWRLFVKENNIKAGDVCIFELINRQDPELKVHIRRS 321 5899999999977777765555...566*********9999998887.***********************99999*****996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.534 | 18 | 111 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.85E-10 | 18 | 109 | No hit | No description |
SuperFamily | SSF101936 | 5.3E-19 | 18 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 6.6E-11 | 19 | 111 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-19 | 19 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.5E-12 | 20 | 109 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.7E-19 | 220 | 321 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-16 | 221 | 321 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.8E-7 | 228 | 322 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.4E-12 | 242 | 321 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.18E-12 | 243 | 320 | No hit | No description |
PROSITE profile | PS50863 | 10.264 | 267 | 322 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MASSSFQKNK HPLFTVIRFF KIILRKSLDD GYLKIPTKFS RKHGNNMPNP VYLKPPDGTQ 60 WKIDWTNDGD EILFQKGWKE FATFYTLDNG HLLWFKYNGT SNIKVNIFDM SGLEIEYTSN 120 GRIDDNLVEA LEEPPPRRGR GRPKKKVIAE PKQSCPSTSK KMKRAIKTKD MDKSPNTQNL 180 KQHVKVKIEE DSQSEETADI KQPIVQCARP DIDVIREARK FKSKNPSFVI KIRQKHQAGS 240 PASLPVCFFR MYFENTKQSA TLHVGKKQWH ATLIYYPYKK SAIISNWRLF VKENNIKAGD 300 VCIFELINRQ DPELKVHIRR SHD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.T11VW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015947092.1 | 0.0 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A444XAP9 | 0.0 | A0A444XAP9_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 6e-30 | B3 family protein |