PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.STB9F | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | ARF | ||||||||
Protein Properties | Length: 745aa MW: 82680.9 Da PI: 6.9389 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.1 | 3.4e-23 | 129 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l Aradu.STB9F 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSLQPPA-QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQL 223 99*****************************9777666.49************************************************..8899999 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ Aradu.STB9F 224 LLGIRRA 230 ****997 PP | |||||||
2 | Auxin_resp | 121.1 | 8.5e-40 | 255 | 338 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v+YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k Aradu.STB9F 255 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 338 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.1E-48 | 113 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-40 | 122 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.02E-21 | 128 | 229 | No hit | No description |
Pfam | PF02362 | 1.2E-21 | 129 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.9E-24 | 129 | 231 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.323 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.0E-35 | 255 | 338 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 745 aa Download sequence Send to blast |
MKLSTSGLPQ QGQHEGGEKK CLNSELWHAC AGPLVSLPTA GTRVVYFPQG HSEQVAATTN 60 REVDGHIPNY PSLPPQLICQ LHNVTMHADV ETDEVYAQMT LQPLTPQEQK DTFLPMELGV 120 PSKQPSNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF SLQPPAQELI ARDLHDVEWK 180 FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQTVMPSS 240 VLSSDSMHIG LLAAAAHAAA TNSCFTVFYN PRASPSEFVI PLSKYIKAVY HTRVSVGMRF 300 RMLFETEESS VRRYMGTITG ISDLDPVRWP NSHWRSVKPC LNTYNVKCHS QEDKDRNSIG 360 VGWDESTAGD RQPRVSLWEI EPLTTFPMYP SLFPLRLKRP WHPGTSSFLD GRDDPTNGLM 420 WLRGGPGDQG LNSINFQSVG MLPWMQQRLD PALLGNDHNQ QYQAMLAAGL QNIGSGELLR 480 QQMLNFQQPF NYLHQSGNVN TSIQLQQQQQ TIQQSVPSNI LQPQAPVLGE NMTQQQLFQK 540 SHNNREDHAE QHTYQDALLV QGDQLHQRQH SSLPSPSYSK SEFVDSSMKF EASGSPGQNM 600 LGSLCPEGSS NLLNLSRGGH SIPTEQSPQQ SWPAKYTPMQ VNAFGNSMSH VQYSGKDIAV 660 ASPHRNSDTQ NPTLFGVNID SSGLLLPATV PHYTTSSADT DASTMPLGNS GYQGPLYACM 720 QDSSELMQSA GQVDPQNQTP TFVKV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-158 | 16 | 381 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.STB9F |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025632486.1 | 0.0 | auxin response factor 8 | ||||
Refseq | XP_025644963.1 | 0.0 | auxin response factor 8 | ||||
Refseq | XP_025644969.1 | 0.0 | auxin response factor 8 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A445AF85 | 0.0 | A0A445AF85_ARAHY; Auxin response factor | ||||
STRING | GLYMA02G40650.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4958 | 28 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.2 | 0.0 | auxin response factor 8 |