PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.SM24D
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 79aa    MW: 9154.22 Da    PI: 9.0072
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.SM24DgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.21.6e-12348447
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     WT eE  ++ da + +G++   +W ++a+ +g g++ +++k ++  +
      Aradu.SM24D  3 WTREENRRFEDALAVHGPDdpnRWQKVANAVG-GKSVEEVKRHYEVL 48
                     *****************99*************.***********876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129313.464153IPR017884SANT domain
Gene3DG3DSA:1.10.10.603.2E-7352IPR009057Homeodomain-like
SuperFamilySSF466891.94E-13356IPR009057Homeodomain-like
SMARTSM007171.4E-7351IPR001005SANT/Myb domain
PfamPF002492.5E-10348IPR001005SANT/Myb domain
CDDcd001671.92E-9349No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MGWTREENRR FEDALAVHGP DDPNRWQKVA NAVGGKSVEE VKRHYEVLKE DVIRIERDQI  60
PLPRYRGSGG INGRHIYGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-203701178RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.SM24D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027942369.12e-43protein RADIALIS-like 1
SwissprotF4JVB89e-25RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A445BR347e-51A0A445BR34_ARAHY; Uncharacterized protein
STRINGXP_007136600.14e-41(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF153651012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.14e-27RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]