PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.SKB1I
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family E2F/DP
Protein Properties Length: 343aa    MW: 37904.3 Da    PI: 5.4792
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.SKB1IgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.31.1e-2791173271
      E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                  ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Aradu.SKB1I  91 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpsnsvlapdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 173
                  689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094044.3E-1315343IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.8E-4686179IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.5E-3590173IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.0E-2592173IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.5E-2193174IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144589.14E-41178281IPR014889Transcription factor DP, C-terminal
SMARTSM011385.2E-68180341IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.43E-42180297No hitNo description
PfamPF087814.4E-41181293IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGTQPEQPCP EEDDEEMLDH GATISSQSMS TSRSVGSPSS RSEQTMATPA SDNTFLRLNH  60
LDIHGDDAGS QGAVASKKKK RGQRAVGGDK SGRGLRQFSM KVCEKVESKG RTTYNEVADE  120
LVAEFADPSN SVLAPDQQQY DEKNIRRRVY DALNVLMAMD IISKDKKEIQ WKGLPRTSQS  180
DIEELKTERL GIRNRIEKKA AYLQELEEQY VGLQNLIKRN EQVCSSGNAP SGGVSLPFIL  240
VQTRPHATVE VEISEDMQLV HFDFNSTPFE LHDDNYVLKA MKFSERPQND NNVTPNVTDG  300
GEGSSMSGLF HVQAPTTVSN PPVRPPSSPP LPGILKARVK PEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B5e-4084178193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.SKB1I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015953001.10.0transcription factor-like protein DPB
RefseqXP_015953002.10.0transcription factor-like protein DPB
RefseqXP_015953003.10.0transcription factor-like protein DPB
RefseqXP_020993264.10.0transcription factor-like protein DPB
RefseqXP_020993265.10.0transcription factor-like protein DPB
RefseqXP_025687028.10.0transcription factor-like protein DPB
RefseqXP_025687029.10.0transcription factor-like protein DPB
RefseqXP_025687030.10.0transcription factor-like protein DPB
RefseqXP_025687031.10.0transcription factor-like protein DPB
RefseqXP_025687032.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-156DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A445E2360.0A0A445E236_ARAHY; Uncharacterized protein
STRINGXP_004505604.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-149Transcription factor DP