PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.SH8LP
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 513aa    MW: 58686.2 Da    PI: 8.7264
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.SH8LPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.25.7e-1851137191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Aradu.SH8LP  51 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTASLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 137
                  6***************998776..8889*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-1551137IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.31300336IPR007527Zinc finger, SWIM-type
PfamPF044341.5E-4307333IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4311338IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MDHSTSDYQL NPGEVDYEFE SNEVPEPVSV VDDEFVPKVG MTFTALEDAG KFYRNYAKAA  60
GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTASLNCPAR IYIHTLKDVG  120
AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN EEADLYEDRH IWVPIYLDHH  180
FWAGMRSTQR SESMHSFFNK YITRNSSLIQ FVKQYDNCLG SREQAERESD AADFHTVIPC  240
ATKSSIEAQF QDAYTHAKFR EVQAQFRGKA NCITRLKNSA LGYSVYEVGE QVSSSIFNKF  300
AVTYDSVEAE VKCQCLLFES RGILCRHALS VLSFEQVSQV SPRYILERWS KKVKRRHTHI  360
KSSHDEPLME PRSKRFDQLV FRSQNICEFA SESEELTAIL YRTYDNVMAE MESLKAKRKG  420
TSSLSHEDAN LESVNELQSP PRIRTRGRPK NRLRSKLDKQ IANATKKKKT KVLSEINLFD  480
AASAVHSNSS QYQGHVMNNQ FRVLAAGDNS LGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.SH8LP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A1M90.0A0A445A1M9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.28e-36far-red elongated hypocotyls 3