PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.S9CWT | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | AP2 | ||||||||
Protein Properties | Length: 461aa MW: 51465.7 Da PI: 7.2017 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.5 | 5.8e-12 | 266 | 319 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + k+ + + g+ gt eeAa+a++ a+ k++g Aradu.S9CWT 266 SQYRGVTRHRWTGRYEAHLWD----NscKKeGQSRKGRQGTQEEAAEAYDIAAIKFRG 319 78****************999....33544577788999****************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.60E-18 | 266 | 328 | No hit | No description |
Pfam | PF00847 | 6.5E-8 | 266 | 319 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.49E-12 | 266 | 327 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.2E-22 | 267 | 333 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-11 | 267 | 327 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.7 | 267 | 327 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-6 | 268 | 279 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-6 | 309 | 329 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MNHASTQIMK TLLDADTIVN LNNQNNILGV PSHPSSSAAV EAVLPPSFCC YYGVEGENVG 60 WYPPLPVLPL KSDGSLFDIE ALSRTKQQAP KLEDFFGGQS QTTVTPECNN AREALPLNYN 120 MFHNPNYLNH VQENINLLHD VNQQHSYYSS ASRNNNNHHQ VMLQGYNMAK EEVPGIHHAM 180 EAKLVVPLDD NRGESLSIGS VAFGDLQSLR LSMSPSSQSS CVTTSQQASH AVMSTSKKRV 240 HDEMVEQNQK QIAHRKSIDT FGQRTSQYRG VTRHRWTGRY EAHLWDNSCK KEGQSRKGRQ 300 GTQEEAAEAY DIAAIKFRGV NAVTNFEIIR YDVEKIMASN DLLSIEQARR KREVIVNNNH 360 KPSTIEESIL MHKSCKNPQI MMINHPPTMA LEEESSSKTG THISNEDKTG LPILYGRPST 420 TAASTRLLAT IPTGWDQPPS HLRPNKLSLP QMPVFAAWTD A |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.S9CWT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ381760 | 1e-40 | FQ381760.1 Vitis vinifera clone SS0ABG85YB10. | |||
GenBank | FQ382141 | 1e-40 | FQ382141.1 Vitis vinifera clone SS0ABG6YB01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015963774.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT isoform X1 | ||||
Refseq | XP_025698579.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT isoform X1 | ||||
Refseq | XP_025698580.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT isoform X2 | ||||
TrEMBL | A0A444WTZ9 | 0.0 | A0A444WTZ9_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA11G04910.2 | 5e-84 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF30151 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 2e-33 | AP2 family protein |