PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aradu.S59W7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | VOZ | ||||||||
Protein Properties | Length: 451aa MW: 50818 Da PI: 5.3622 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 411.6 | 1.5e-126 | 202 | 419 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdl 98 pppsaflgpkc+lwdc+rpaqg + +qdycss h+ la neglpgttp+lrp+gi++kdg+lfaal ak+qgkevgip+cegaa++kspw+a+elfdl Aradu.S59W7 202 PPPSAFLGPKCSLWDCFRPAQGLQICQDYCSSGHELLANNEGLPGTTPILRPGGIGVKDGPLFAALLAKTQGKEVGIPKCEGAASTKSPWKAPELFDL 299 89************************************************************************************************ PP VOZ 99 sllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvde.kks 195 s+leget+rewlffd+prraf sgnrkqrslpdy+grgwhesrkqvmke+gg+krsyymdpqp+s++ewhlyeyein++d+lalyrlelk vd+ kks Aradu.S59W7 300 SFLEGETLREWLFFDQPRRAFVSGNRKQRSLPDYNGRGWHESRKQVMKEHGGHKRSYYMDPQPLSYLEWHLYEYEINNQDSLALYRLELKFVDNkKKS 397 *******************************************************************************************9862579 PP VOZ 196 akgkvskdsladlqkklgrlta 217 +k+k++k+sladlq+k+g+l+a Aradu.S59W7 398 PKAKLTKESLADLQNKMGKLSA 419 9*******************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 451 aa Download sequence Send to blast |
MMKDNLKNKC GSSSHQSMKE KEKHHLDKIQ GIFINLQSSR KENRYKDIVM FEEQMHQLLR 60 EWKAELESPA TSLAEGSLGS FPGELAQLLQ ELEENDDAIS PLEKPETLKT QLHPHTVHDV 120 NYPSFHEKSF DDSHMLHDTF EGFGQFDGPA STLQSDTSDM ITQLDSHTLV IEEGFDYGQF 180 FENEAKQCEE DTMPNVLPNI CPPPSAFLGP KCSLWDCFRP AQGLQICQDY CSSGHELLAN 240 NEGLPGTTPI LRPGGIGVKD GPLFAALLAK TQGKEVGIPK CEGAASTKSP WKAPELFDLS 300 FLEGETLREW LFFDQPRRAF VSGNRKQRSL PDYNGRGWHE SRKQVMKEHG GHKRSYYMDP 360 QPLSYLEWHL YEYEINNQDS LALYRLELKF VDNKKKSPKA KLTKESLADL QNKMGKLSAD 420 VLGDDGGTAD GKIKAKSENG GSPEHETKNP E |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Aradu.S59W7 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015936296.1 | 0.0 | transcription factor VOZ1 | ||||
Refseq | XP_025614582.1 | 0.0 | transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 1e-147 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A445BXU8 | 0.0 | A0A445BXU8_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA06G43890.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1498 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-144 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
---|---|---|---|
|