PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.S4CJ2
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28903.4 Da    PI: 8.1385
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.S4CJ2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.81.7e-294191151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien+ nr+vtfskRrng+lKKA+ELSvLCda+v viifs++g+l+e+ss
  Aradu.S4CJ2 41 KRIENECNRKVTFSKRRNGLLKKAHELSVLCDAQVGVIIFSQKGTLFEFSS 91
                 79***********************************************96 PP
2K-box77.53.5e-26115205999
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                  l e   ++l+ ++a ++++ie L+ + R++lG +L+s+s+ eLqq+e++L++sl+ iR +K++l++eqie+lq ke++l +en +L+++ +
  Aradu.S4CJ2 115 LREDYIQKLKFDSASMEEKIEILELSRRKMLGHCLSSCSFDELQQMEDKLHTSLQCIRLRKTQLFKEQIEQLQSKERNLLKENVRLSAMCM 205
                  667788999*****************************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-383392IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.0113393IPR002100Transcription factor, MADS-box
CDDcd002658.49E-3835108No hitNo description
PROSITE patternPS0035003589IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.37E-3135110IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-283555IPR002100Transcription factor, MADS-box
PfamPF003194.3E-254289IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-285570IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-287091IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.072120210IPR002487Transcription factor, K-box
PfamPF014863.1E-21121204IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MFLWLKINRN KFPTTIEESP ESKLELGRIS IEMVRGKTEM KRIENECNRK VTFSKRRNGL  60
LKKAHELSVL CDAQVGVIIF SQKGTLFEFS STSSHISKIL ERYQEYTGVF PPNKLREDYI  120
QKLKFDSASM EEKIEILELS RRKMLGHCLS SCSFDELQQM EDKLHTSLQC IRLRKTQLFK  180
EQIEQLQSKE RNLLKENVRL SAMCMEKPLK HIEEEATETT HHTLDVETDL FIGLPKQYAD  240
HNQIYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-1733107173MEF2 CHIMERA
6byy_B2e-1733107173MEF2 CHIMERA
6byy_C2e-1733107173MEF2 CHIMERA
6byy_D2e-1733107173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.S4CJ2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015941636.11e-178MADS-box protein AGL42 isoform X1
SwissprotQ9FIS13e-62AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A444XW101e-145A0A444XW10_ARAHY; Uncharacterized protein
STRINGGLYMA10G38541.11e-76(Glycine max)
STRINGGLYMA20G29300.11e-76(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.31e-63AGAMOUS-like 42