PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.S1UIQ | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 139aa MW: 16182.9 Da PI: 10.1278 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.2 | 7e-26 | 9 | 54 | 1 | 46 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 krien+snrqvt+skR+ngilKKA+E+SvLCda+v++iif ++ l Aradu.S1UIQ 9 KRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLIIFDTKELL 54 79**************************************887766 PP | |||||||
2 | K-box | 54.3 | 5.9e-19 | 53 | 126 | 24 | 98 |
K-box 24 LkkeienLq..reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 L +e+L + Rhl+Ged++sL++keL+ Le++L+k+l+ iR+kK+e+ ++ ++ + e+e++e n L++ + Aradu.S1UIQ 53 L---LEKLSgmLNMRHLKGEDITSLNYKELMALENDLDKGLNGIREKKMEVHRMFKRNGKILEEENKELNFLLQQHM 126 3...3444444466*********************************************************999976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.4E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 27.6 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.81E-25 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-20 | 10 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.265 | 40 | 128 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.6E-13 | 62 | 119 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MGRGKIEIKR IENSSNRQVT YSKRKNGILK KAKEISVLCD AQVSLIIFDT KELLEKLSGM 60 LNMRHLKGED ITSLNYKELM ALENDLDKGL NGIREKKMEV HRMFKRNGKI LEEENKELNF 120 LLQQHMALEG ARNMHGQWI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 5e-15 | 1 | 50 | 1 | 50 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 5e-15 | 1 | 50 | 1 | 50 | Myocyte-specific enhancer factor 2B |
1tqe_R | 5e-15 | 1 | 50 | 1 | 50 | Myocyte-specific enhancer factor 2B |
1tqe_S | 5e-15 | 1 | 50 | 1 | 50 | Myocyte-specific enhancer factor 2B |
6byy_A | 5e-15 | 1 | 50 | 1 | 50 | MEF2 CHIMERA |
6byy_B | 5e-15 | 1 | 50 | 1 | 50 | MEF2 CHIMERA |
6byy_C | 5e-15 | 1 | 50 | 1 | 50 | MEF2 CHIMERA |
6byy_D | 5e-15 | 1 | 50 | 1 | 50 | MEF2 CHIMERA |
6bz1_A | 4e-15 | 1 | 50 | 1 | 50 | MEF2 CHIMERA |
6bz1_B | 4e-15 | 1 | 50 | 1 | 50 | MEF2 CHIMERA |
6bz1_C | 4e-15 | 1 | 50 | 1 | 50 | MEF2 CHIMERA |
6bz1_D | 4e-15 | 1 | 50 | 1 | 50 | MEF2 CHIMERA |
6c9l_A | 5e-15 | 1 | 50 | 1 | 50 | Myocyte-specific enhancer factor 2B |
6c9l_B | 5e-15 | 1 | 50 | 1 | 50 | Myocyte-specific enhancer factor 2B |
6c9l_C | 5e-15 | 1 | 50 | 1 | 50 | Myocyte-specific enhancer factor 2B |
6c9l_D | 5e-15 | 1 | 50 | 1 | 50 | Myocyte-specific enhancer factor 2B |
6c9l_E | 5e-15 | 1 | 50 | 1 | 50 | Myocyte-specific enhancer factor 2B |
6c9l_F | 5e-15 | 1 | 50 | 1 | 50 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.S1UIQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015934554.1 | 4e-77 | floral homeotic protein PMADS 2-like | ||||
Refseq | XP_025612881.1 | 4e-77 | floral homeotic protein PMADS 2 | ||||
Swissprot | Q0HA25 | 1e-44 | MADS9_VITVI; Agamous-like MADS-box protein MADS9 | ||||
TrEMBL | A0A445BT05 | 9e-76 | A0A445BT05_ARAHY; Uncharacterized protein | ||||
STRING | XP_007137476.1 | 1e-69 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4355 | 32 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 1e-32 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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