PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.RZL74 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 185aa MW: 21338.6 Da PI: 10.0159 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 34.2 | 8.1e-11 | 50 | 136 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++Y+k + Fs++++ +++ ++i++r vCs+e + +++ + + +t+++ ++C ++ v k g w ++k++l+ +H+ +p Aradu.RZL74 50 KFYKNYSKLASFSTKIRDMNRG--GDKIKNRLIVCSREERWKSKISP---TLKTNPSAGINCPVRIYVPILKdVGLWTISKVVLNQSHPYCP 136 6****************99988..8889**********998887766...999***************988879**************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-7 | 50 | 136 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MNESTSNQLN ENDLDYSSKM NQADETRCVM NEQFVPKVGM ILKTLEEAGK FYKNYSKLAS 60 FSTKIRDMNR GGDKIKNRLI VCSREERWKS KISPTLKTNP SAGINCPVRI YVPILKDVGL 120 WTISKVVLNQ SHPYCPDRIE MLKQHRELSI AVRGLTYMNS SLPRSPLLGR DEKHTKEREN 180 ARIFQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.RZL74 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015955930.1 | 1e-108 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A445DSI6 | 3e-96 | A0A445DSI6_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21 | 14 | 477 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 2e-06 | FAR1 family protein |