PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.RXK4E | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | G2-like | ||||||||
Protein Properties | Length: 315aa MW: 35636 Da PI: 7.2848 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 71.1 | 1.7e-22 | 15 | 58 | 1 | 44 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtle 44 kprl+WtpeLH+rF+eav+qLGG+ekAtPk+++++m+++gLtl Aradu.RXK4E 15 KPRLKWTPELHQRFIEAVHQLGGAEKATPKSLMRVMGIQGLTLL 58 79****************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-19 | 13 | 57 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.79E-8 | 14 | 57 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-14 | 15 | 57 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.5E-6 | 17 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.7E-21 | 101 | 147 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MQNQSVHFVL STDAKPRLKW TPELHQRFIE AVHQLGGAEK ATPKSLMRVM GIQGLTLLGK 60 SHQLETCSDN QQEDCRKIKS SHGHCSKENS VGEQKQVTEN MKIAQALHMQ MEVQRKLCEQ 120 IEVQKHLQLR IEAQGKYLQS VLKKAQEALQ GYNSSSIGLE LTKAELSQLV TVINNACPGS 180 PISELTETRG LSLRSDDERK QDKGTMCSLE SSLTSSESCG RKEEIHQPME EETRWNLKSF 240 NEISLEFPFE AFHQTGKGQS GDDSSKEERV RKRNAKTDSE GSYCVEQPSG KRCGNKLRKL 300 EFDLNNQYHN DTDSR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.RXK4E |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT137363 | 5e-48 | BT137363.1 Medicago truncatula clone JCVI-FLMt-17O6 unknown mRNA. | |||
GenBank | BT149460 | 5e-48 | BT149460.1 Lotus japonicus clone JCVI-FLLj-19J4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015965699.1 | 0.0 | myb family transcription factor PHL8 | ||||
Swissprot | F4I274 | 1e-55 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | A0A445D5F1 | 0.0 | A0A445D5F1_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA02G12070.1 | 1e-135 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5218 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.1 | 5e-58 | G2-like family protein |
Publications ? help Back to Top | |||
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