PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.RW5KN | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | Trihelix | ||||||||
Protein Properties | Length: 598aa MW: 69080.1 Da PI: 6.0979 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 39.4 | 1.6e-12 | 119 | 184 | 2 | 70 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+++ev aL+++r+ m+++ + + W++vs+k+ e gf++s +Ckek+e+ +++ + +++++ Aradu.RW5KN 119 WSNDEVVALLRIRSTMDTTWFPQ---LTYWDHVSRKLGELGFKKSGDKCKEKFEDETRYFNNYAKNNSY 184 *****************998776...89********************************999988865 PP | |||||||
2 | trihelix | 90.1 | 2.5e-28 | 453 | 544 | 1 | 86 |
trihelix 1 rWtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++evlaLi++r + eer + ++ k plWe++s+ m++ g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql+ Aradu.RW5KN 453 RWPRDEVLALINLRCesikmnnNAEERESGNNNKIPLWERISQGMSDLGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SIDSRTCPYFHQLK 544 8*************977744333333333357999******************************************8.78889*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.017 | 111 | 172 | IPR017877 | Myb-like domain |
SMART | SM00717 | 10 | 115 | 174 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 2.0E-8 | 118 | 182 | No hit | No description |
PROSITE profile | PS50090 | 6.365 | 446 | 517 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.2 | 450 | 519 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 8.85E-24 | 452 | 524 | No hit | No description |
Pfam | PF13837 | 2.1E-19 | 452 | 546 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001158 | Molecular Function | enhancer sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 598 aa Download sequence Send to blast |
MFDGLPSSSE HFHQFITPRT TTSTTLPLPH HHHHHHHLSP SSSSSSSSFS PLLHHHASLT 60 PINTNTFLPF DPYNPHHQQQ QPNATFSSVL NNNNLFHTSA TDERVQTQVL PNDLIDSSWS 120 NDEVVALLRI RSTMDTTWFP QLTYWDHVSR KLGELGFKKS GDKCKEKFED ETRYFNNYAK 180 NNSYRFLNEL EEFYQGDNHN ENPMVDNQDH VVTEKTQEFE HPMNAGGGDI EEVEEEEEEE 240 EEEEEESSRD GKSVKEQCEE DNESEKKMKM KRKRKRRCRF EMLKGFCESI VNNMMAQQEE 300 IHNKLIEDML RRDEEKLQRE EAWKKQETER MNKELQIMAQ EQAIAGDRQA SIIEFLKKYA 360 ATNPNNNEPT PSSSKLIIPS SHQIQIPPLS AENPSSMSDT LLQQVHSSST HSSPASHNNT 420 TSSSSLNRHD NYHSNLLVKP LVTDQKENNV GRRWPRDEVL ALINLRCESI KMNNNAEERE 480 SGNNNKIPLW ERISQGMSDL GYKRSAKRCK EKWENINKYF RKTKDVNKKR SIDSRTCPYF 540 HQLKSLYDEG KLVHQPETTT SENHSGQLLP PSDQVGSGGG FSDDHEKTLI QEPPLNFG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 265 | 275 | KKMKMKRKRKR |
2 | 270 | 276 | KRKRKRR |
3 | 271 | 276 | RKRKRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00011 | PBM | Transfer from AT5G28300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.RW5KN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 4e-56 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015968510.1 | 0.0 | trihelix transcription factor GTL2 | ||||
TrEMBL | A0A445CNV1 | 0.0 | A0A445CNV1_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA19G43280.1 | 1e-156 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5043 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28300.1 | 7e-72 | Trihelix family protein |