PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.RUB4J | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 495aa MW: 57562.6 Da PI: 9.1995 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 81.1 | 1.9e-25 | 69 | 158 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 fYn+Y++ GF r+ k+ ++ + gei+++tfvC+++g+re++ + +++r+++++tr+gC a++++k+++ +g+w+v+++++eHnH la Aradu.RUB4J 69 FYNNYSRLKGFASRRGKTVRN-TAGEIVRYTFVCNRQGFREKKWLEkVDRKREHKVVTRCGCMAEMRIKRKEgSGRWYVSRFVEEHNHVLA 158 9****************9998.8888***************997664678888999********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.8E-23 | 69 | 157 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 9.742 | 296 | 329 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.005 | 304 | 331 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 0.0012 | 305 | 326 | IPR007527 | Zinc finger, SWIM-type |
SuperFamily | SSF57756 | 3.77E-6 | 433 | 471 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS50158 | 8.631 | 452 | 469 | IPR001878 | Zinc finger, CCHC-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 495 aa Download sequence Send to blast |
MDWHEHVVVA KHYDDWDTMY DTRVEEDAEL SDWEGRGASM LPVFFGLDGL RDEDVLEMEF 60 SSPEEASGFY NNYSRLKGFA SRRGKTVRNT AGEIVRYTFV CNRQGFREKK WLEKVDRKRE 120 HKVVTRCGCM AEMRIKRKEG SGRWYVSRFV EEHNHVLAYG KLVDYLRSHR KISEVEVAQL 180 TSMREIGISI PKIYESFAAQ LGGFNLVTFT KCVDFLRDTE DELDFRSWYG TPVLQTEFIE 240 LEKSGWTRFT REMFLRYRDS LKRCVRVRIY EFNDSENPHA YTLQKYRRPE MNWKVYRDHI 300 SNRFSCTCMR MESFGIPCVH ILSVCVRLDL VEIPESLVLR RWSKASKLEI HNQCGEQHTA 360 DPSVTYRTRL GAFSQLCKRL GRVACMSDED FKLYSDKVMS DALFLEIKYG LRPSTDDMTT 420 ANDCEVKDPI RVRTKGTGRM SQAGGSASKT KRKCSTCGKL GHRKTICPNG GAQASTRNKE 480 SHAGRNKRKR SKVTT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 258 | 263 | DSLKRC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.RUB4J |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020999542.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A444ZXD5 | 0.0 | A0A444ZXD5_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11042 | 2 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 6e-22 | FAR1-related sequence 5 |