PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.RRT20
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 394aa    MW: 45642.6 Da    PI: 7.3763
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.RRT20genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1782.6e-55651951128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                  +ppGfrFhPtdeelv++yL+kk+++k+++l +vik+vd+yk+ePwdL++  k+ + +e+ewyfFs++dkky+tg+r+nratk+g+Wkatg+dk+++s+
  Aradu.RRT20  65 VPPGFRFHPTDEELVDYYLRKKIASKRIDL-DVIKDVDLYKIEPWDLQEicKIGSdDENEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSS 161
                  69****************************.9***************954455553556**************************************8 PP

          NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   ++ lvg++ktLvfykgrap+g k++W+mheyrl
  Aradu.RRT20 162 sSHCLVGMRKTLVFYKGRAPNGLKSNWIMHEYRL 195
                  55567***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.14E-6160211IPR003441NAC domain
PROSITE profilePS5100560.75565211IPR003441NAC domain
PfamPF023651.8E-2866195IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
LRILGIYLIT SIILECTRPI LIDREISHQV IPRTRKIYVQ RFYLEFLGAR YIKLRRFEMN  60
AFSHVPPGFR FHPTDEELVD YYLRKKIASK RIDLDVIKDV DLYKIEPWDL QEICKIGSDD  120
ENEWYFFSHK DKKYPTGTRT NRATKAGFWK ATGRDKAIYS SSSHCLVGMR KTLVFYKGRA  180
PNGLKSNWIM HEYRLDSNQE DGWVVCRVFK KRMPTLRNVV DYDDQLPFMQ GSPSTHYPCK  240
HELHQFQYNT HDAFLQLPHL ESPNQVLSCG SPVIAPYAYA ENNNNNNGTS STSALQSYSS  300
ERIQQQLHLL YGSNIEQAVV MDQVTDWRVL DKFVASQLMS QDQDQASKET CSVADEQHVA  360
TTVLPNGSTK QEMVPQDDYV STSASSNCDI HLWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-49552125169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.RRT20
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997885.10.0NAC domain-containing protein 7-like isoform X1
SwissprotQ9FWX21e-115NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A445D9P20.0A0A445D9P2_ARAHY; Uncharacterized protein
STRINGXP_007155625.11e-139(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126933106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-116NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]